{ "type": "genome", "identifier": "GCF_004353325.1", "organism": "Streptococcus downii", "title": "Streptococcus downii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SERGAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004353325.1", "bioproject": "PRJNA224116", "biosample": "SAMN06579452", "wgs_master": "MZNX00000000.1", "refseq_category": "reference genome", "taxid": "1968889", "species_taxid": "1968889", "organism_name": "Streptococcus downii", "infraspecific_name": "strain=CECT 9732", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/15", "asm_name": "ASM435332v1", "asm_submitter": "SERGAS", "gbrs_paired_asm": "GCA_004353325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/353/325/GCF_004353325.1_ASM435332v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1922750", "genome_size_ungapped": "1920601", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004353325.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "1931", "protein_coding_gene_count": "1845", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-15", "dateModified": "2019-03-15", "datePublished": "2019-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus downii" ], "sample_taxid": [ "1968889" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain:Santiago de Compostela" ], 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1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7773, "matched_fragments": 138, "total_fragments": 636, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004353325.1", "gtdb_species": "s__Streptococcus sp004353325", "ani": 100.0, "matched_fragments": 635, "total_fragments": 636, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002096685.1", "gtdb_species": "s__Streptococcus oralis_AD", "ani": 94.9175, "matched_fragments": 564, "total_fragments": 636, "gtdb_taxonomy": 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