{
    "type": "genome",
    "identifier": "GCF_004353825.1",
    "organism": "Occultella glacieicola",
    "title": "Occultella glacieicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Tibetan Plateau Research",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004353825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10923819",
        "wgs_master": "SMNA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2518684",
        "species_taxid": "2518684",
        "organism_name": "Occultella glacieicola",
        "infraspecific_name": "strain=T3246-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/16",
        "asm_name": "ASM435382v1",
        "asm_submitter": "Institute of Tibetan Plateau Research",
        "gbrs_paired_asm": "GCA_004353825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/353/825/GCF_004353825.1_ASM435382v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5339675",
        "genome_size_ungapped": "5339675",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004353825.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4905",
        "protein_coding_gene_count": "4812",
        "non_coding_gene_count": "51",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-16",
    "dateModified": "2019-03-16",
    "datePublished": "2019-03-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Occultella glacieicola"
        ],
        "sample_taxid": [
            "2518684"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.426 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5339675",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "618250",
        "N50 (bp)": "517486",
        "Gap Ratio (%)": "0.000112",
        "GCcontent (%)": "71.4",
        "Number of CDSs": "4874",
        "Average Protein Length": "335.8",
        "Coding Ratio (%)": "92.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Occultella glacieicola",
                "strain": "strain=T3246-1",
                "accession": "GCA_004353825.1",
                "taxid": 2518684,
                "species_taxid": 2518684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1768,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Occultella kanbiaonis",
                "strain": "strain=HY164",
                "accession": "GCA_009708215.1",
                "taxid": 2675754,
                "species_taxid": 2675754,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.0464,
                "matched_fragments": 1445,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Occultella gossypii",
                "strain": "strain=N2-46",
                "accession": "GCA_019947135.1",
                "taxid": 2800820,
                "species_taxid": 2800820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9068,
                "matched_fragments": 1409,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Occultella aeris",
                "strain": "strain=CIP 111667",
                "accession": "GCA_902703175.1",
                "taxid": 2761496,
                "species_taxid": 2761496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.896,
                "matched_fragments": 1419,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruania albidiflava",
                "strain": "strain=DSM 18029",
                "accession": "GCA_000421225.1",
                "taxid": 366586,
                "species_taxid": 366586,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3926,
                "matched_fragments": 605,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruania suaedae",
                "strain": "strain=LR1S40",
                "accession": "GCA_021049265.1",
                "taxid": 2897774,
                "species_taxid": 2897774,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1183,
                "matched_fragments": 590,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruania zhangjianzhongii",
                "strain": "strain=HY168",
                "accession": "GCA_008000995.1",
                "taxid": 2603206,
                "species_taxid": 2603206,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0257,
                "matched_fragments": 637,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudactinotalea suaedae",
                "strain": "strain=KACC 17839",
                "accession": "GCA_009733815.1",
                "taxid": 1524924,
                "species_taxid": 1524924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6894,
                "matched_fragments": 633,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia yuyongxinii",
                "strain": "strain=Z443",
                "accession": "GCA_006352065.1",
                "taxid": 2589797,
                "species_taxid": 2589797,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7067,
                "matched_fragments": 456,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004353825.1",
                "gtdb_species": "s__Occultella glacieicola",
                "ani": 100.0,
                "matched_fragments": 1768,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Occultella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009708215.1",
                "gtdb_species": "s__Occultella sp009708215",
                "ani": 87.0469,
                "matched_fragments": 1445,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Occultella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "97.28",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_902703175.1",
                "gtdb_species": "s__Occultella aeris",
                "ani": 86.8982,
                "matched_fragments": 1418,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Occultella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016649925.1",
                "gtdb_species": "s__JAENWO01 sp016649925",
                "ani": 79.6379,
                "matched_fragments": 409,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__JAENWO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000421225.1",
                "gtdb_species": "s__Ruania albidiflava",
                "ani": 79.4022,
                "matched_fragments": 603,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Ruania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019116305.1",
                "gtdb_species": "s__Ruania gallistercoris",
                "ani": 79.0348,
                "matched_fragments": 532,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Ruania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008000995.1",
                "gtdb_species": "s__Ruania sp008000995",
                "ani": 79.0121,
                "matched_fragments": 639,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Ruania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900105765.1",
                "gtdb_species": "s__Haloactinobacterium album",
                "ani": 78.8053,
                "matched_fragments": 599,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Haloactinobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009733795.1",
                "gtdb_species": "s__Pseudactinotalea caeni",
                "ani": 78.7166,
                "matched_fragments": 604,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Pseudactinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006352065.1",
                "gtdb_species": "s__Georgenia sp006352065",
                "ani": 77.7226,
                "matched_fragments": 454,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.59",
                "min_intra_species_ani": "95.59",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Occultella",
        "glacieicola"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}