{ "type": "genome", "identifier": "GCF_004353845.1", "organism": "Citrobacter arsenatis", "title": "Citrobacter arsenatis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hubei Polytechnic University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004353845.1", "bioproject": "PRJNA224116", "biosample": "SAMN11080768", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2546350", "species_taxid": "2546350", "organism_name": "Citrobacter arsenatis", "infraspecific_name": "strain=LY-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/17", "asm_name": "ASM435384v1", "asm_submitter": "Hubei Polytechnic University", "gbrs_paired_asm": "GCA_004353845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/353/845/GCF_004353845.1_ASM435384v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5370228", "genome_size_ungapped": "5370228", "gc_percent": "52.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004353845.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5134", "protein_coding_gene_count": "4949", "non_coding_gene_count": "116", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-17", "dateModified": "2019-03-17", "datePublished": "2019-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Citrobacter arsenatis" ], "sample_taxid": [ "2546350" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Huangshi" ], "sample_host_location_id": [], "data_size": "1.522 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5370228", "Number of Sequences": "3", "Longest Sequences (bp)": "5211009", "N50 (bp)": "5211009", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.9", "Number of CDSs": "5016", "Average Protein Length": "313.0", "Coding Ratio (%)": "87.7", "Number of rRNAs": "25", "Number of tRNAs": "84", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Citrobacter arsenatis", "strain": "strain=LY-1", "accession": "GCA_004353845.1", "taxid": 2546350, "species_taxid": 2546350, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1786, "total_fragments": 1789, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Citrobacter europaeus", "strain": "strain=97/79", "accession": "GCA_900079995.3", "taxid": 1914243, "species_taxid": 1914243, "relation_to_type": "type", "validated": true, "ani": 94.2255, "matched_fragments": 1464, "total_fragments": 1789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter braakii", "strain": "strain=FDAARGOS 1421", "accession": "GCA_019048805.1", "taxid": 57706, "species_taxid": 57706, "relation_to_type": "type", "validated": true, "ani": 93.011, "matched_fragments": 1419, "total_fragments": 1789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter braakii", "strain": "strain=ATCC 51113", "accession": "GCA_002075345.1", "taxid": 57706, "species_taxid": 57706, "relation_to_type": "type", "validated": true, "ani": 92.9518, "matched_fragments": 1412, "total_fragments": 1789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter 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"GCA_000759735.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 92.4923, "matched_fragments": 1424, "total_fragments": 1789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=ATCC 8090", "accession": "GCA_000734905.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 92.4333, "matched_fragments": 1378, "total_fragments": 1789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter pasteurii", "strain": "strain=FDAARGOS 1424", "accession": "GCA_019047765.1", "taxid": 1563222, "species_taxid": 1563222, "relation_to_type": "type", "validated": true, "ani": 89.8757, "matched_fragments": 1336, "total_fragments": 1789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, 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81.4525, "matched_fragments": 808, "total_fragments": 1789, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004353845.1", "gtdb_species": "s__Citrobacter freundii_E", "ani": 100.0, "matched_fragments": 1785, "total_fragments": 1789, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900079995.3", "gtdb_species": "s__Citrobacter europaeus", "ani": 94.2255, "matched_fragments": 1464, "total_fragments": 1789, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter", 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