{ "type": "genome", "identifier": "GCF_004353905.1", "organism": "Paraburkholderia guartelaensis", "title": "Paraburkholderia guartelaensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Embrapa Soja", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004353905.1", "bioproject": "PRJNA224116", "biosample": "SAMN11089664", "wgs_master": "SMOD00000000.1", "refseq_category": "reference genome", "taxid": "2546446", "species_taxid": "2546446", "organism_name": "Paraburkholderia guartelaensis", "infraspecific_name": "strain=CNPSo 3008", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/17", "asm_name": "ASM435390v1", "asm_submitter": "Embrapa Soja", "gbrs_paired_asm": "GCA_004353905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/353/905/GCF_004353905.1_ASM435390v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9532701", "genome_size_ungapped": "9532701", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "173", "contig_count": "173", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004353905.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "8790", "protein_coding_gene_count": "8376", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-17", "dateModified": "2019-03-17", "datePublished": "2019-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia guartelaensis" ], "sample_taxid": [ "2546446" ], "sample_host_organism": [ "Mimosa gymnas" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Guartela State Park, Tibagi, Parana." ], "sample_host_location_id": [], "data_size": "2.651 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9532701", "Number of Sequences": "173", "Longest Sequences (bp)": "510699", "N50 (bp)": "172576", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "8565", "Average Protein Length": "315.9", "Coding Ratio (%)": "85.2", "Number of rRNAs": "1", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia guartelaensis", "strain": "strain=CNPSo 3008", "accession": "GCA_004353905.1", "taxid": 2546446, "species_taxid": 2546446, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3092, "total_fragments": 3099, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia nodosa", "strain": "strain=DSM 21604", "accession": "GCA_000519185.1", "taxid": 392320, "species_taxid": 392320, "relation_to_type": "type", "validated": true, "ani": 94.126, "matched_fragments": 2457, "total_fragments": 3099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia heleia", "strain": "strain=NBRC 101817", "accession": "GCA_000739775.1", "taxid": 634127, "species_taxid": 634127, "relation_to_type": "type", "validated": true, "ani": 92.5459, "matched_fragments": 1965, "total_fragments": 3099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia hiiakae", "strain": "strain=LMG 27952", "accession": "GCA_904848665.1", "taxid": 1081782, "species_taxid": 1081782, "relation_to_type": "type", "validated": true, "ani": 91.7046, "matched_fragments": 2105, "total_fragments": 3099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia acidiphila", "strain": "strain=7Q-K02", "accession": "GCA_009789655.1", "taxid": 2571747, "species_taxid": 2571747, "relation_to_type": "type", "validated": true, "ani": 91.5866, "matched_fragments": 2120, "total_fragments": 3099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia pallida", "strain": "strain=7MH5", "accession": "GCA_004524855.1", "taxid": 2547399, "species_taxid": 2547399, "relation_to_type": "type", "validated": true, "ani": 85.2403, "matched_fragments": 1732, "total_fragments": 3099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia silviterrae", "strain": "strain=4M-K11", "accession": "GCA_004353915.1", "taxid": 2528715, "species_taxid": 2528715, "relation_to_type": "type", "validated": true, "ani": 85.2127, "matched_fragments": 1690, "total_fragments": 3099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 81.2772, "matched_fragments": 1273, "total_fragments": 3099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia azotifigens", "strain": "strain=NF 2-5-3", "accession": "GCA_007995085.1", "taxid": 2057004, "species_taxid": 2057004, "relation_to_type": "type", "validated": true, "ani": 81.2216, "matched_fragments": 1355, "total_fragments": 3099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 80.8459, "matched_fragments": 1167, "total_fragments": 3099, "ani_threshold": 95, "status": "below_threshold" } ], 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000519185.1", "gtdb_species": "s__Paraburkholderia nodosa", "ani": 94.1361, "matched_fragments": 2456, "total_fragments": 3099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003096715.1", "gtdb_species": "s__Paraburkholderia silvatlantica", "ani": 92.7595, "matched_fragments": 1905, "total_fragments": 3099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.5542, "mean_intra_species_ani": "99.65", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000739775.1", "gtdb_species": "s__Paraburkholderia heleia", "ani": 92.5296, "matched_fragments": 1967, "total_fragments": 3099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.5542, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_904848665.1", "gtdb_species": "s__Paraburkholderia hiiakae", "ani": 91.716, "matched_fragments": 2103, "total_fragments": 3099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009789655.1", "gtdb_species": "s__Paraburkholderia acidiphila", "ani": 91.5833, "matched_fragments": 2121, "total_fragments": 3099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.206, "cell_length": 0.138, "doubling_h": 0.0, "growth_tmp": 29.45, "optimum_tmp": 29.643, "optimum_ph": 6.11, "genome_size": 7672919.331, "gc_content": 62.985, "coding_genes": 7196.441, "rRNA16S_genes": 5.571, "tRNA_genes": 61.73, "gram_stain": 0.0, "sporulation": 0.035, "motility": 0.689, "range_salinity": 0.5, 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