{
    "type": "genome",
    "identifier": "GCF_004353985.1",
    "organism": "Paracraurococcus ruber",
    "title": "Paracraurococcus ruber",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University at Weihai",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004353985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11097667",
        "wgs_master": "SMOA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "77675",
        "species_taxid": "77675",
        "organism_name": "Paracraurococcus ruber",
        "infraspecific_name": "strain=JCM9931",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/17",
        "asm_name": "ASM435398v1",
        "asm_submitter": "Shandong University at Weihai",
        "gbrs_paired_asm": "GCA_004353985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/353/985/GCF_004353985.1_ASM435398v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7169105",
        "genome_size_ungapped": "7169105",
        "gc_percent": "73.000000",
        "replicon_count": "0",
        "scaffold_count": "786",
        "contig_count": "786",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004353985.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "6700",
        "protein_coding_gene_count": "6453",
        "non_coding_gene_count": "58",
        "pubmed_id": "9734062"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-17",
    "dateModified": "2019-03-17",
    "datePublished": "2019-03-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paracraurococcus ruber"
        ],
        "sample_taxid": [
            "77675"
        ],
        "sample_host_organism": [
            "not collected"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.921 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7169105",
        "Number of Sequences": "786",
        "Longest Sequences (bp)": "188134",
        "N50 (bp)": "22677",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.8",
        "Number of CDSs": "6122",
        "Average Protein Length": "314.0",
        "Coding Ratio (%)": "80.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "68",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Siccirubricoccus deserti",
                "strain": "strain=CGMCC 1.15936",
                "accession": "GCA_014644195.1",
                "taxid": 2013562,
                "species_taxid": 2013562,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0075,
                "matched_fragments": 1106,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siccirubricoccus deserti",
                "strain": "strain=SYSU D8009",
                "accession": "GCA_014283215.1",
                "taxid": 2013562,
                "species_taxid": 2013562,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9492,
                "matched_fragments": 1121,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Belnapia mucosa",
                "strain": "strain=T6",
                "accession": "GCA_016775475.1",
                "taxid": 2804532,
                "species_taxid": 2804532,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7177,
                "matched_fragments": 1161,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Belnapia rosea",
                "strain": "strain=CGMCC 1.10758",
                "accession": "GCA_900104205.1",
                "taxid": 938405,
                "species_taxid": 938405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4878,
                "matched_fragments": 1079,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Belnapia rosea",
                "strain": "strain=CPCC 100156",
                "accession": "GCA_900101615.1",
                "taxid": 938405,
                "species_taxid": 938405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4684,
                "matched_fragments": 1069,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Belnapia arida",
                "strain": "strain=T18",
                "accession": "GCA_016773205.1",
                "taxid": 2804533,
                "species_taxid": 2804533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0961,
                "matched_fragments": 1091,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Belnapia moabensis",
                "strain": "strain=DSM 16746",
                "accession": "GCA_000745835.1",
                "taxid": 365533,
                "species_taxid": 365533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9569,
                "matched_fragments": 1071,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas rubea",
                "strain": "strain=MO17",
                "accession": "GCA_016106015.1",
                "taxid": 2748666,
                "species_taxid": 2748666,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5061,
                "matched_fragments": 716,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas hellenica",
                "strain": "strain=LMG 31523",
                "accession": "GCA_018129085.1",
                "taxid": 2687306,
                "species_taxid": 2687306,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1086,
                "matched_fragments": 924,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Falsiroseomonas tokyonensis",
                "strain": "strain=K-20",
                "accession": "GCA_019024325.1",
                "taxid": 430521,
                "species_taxid": 430521,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.081,
                "matched_fragments": 955,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Falsiroseomonas frigidaquae",
                "strain": "strain=JCM 15073",
                "accession": "GCA_012163145.1",
                "taxid": 487318,
                "species_taxid": 487318,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9954,
                "matched_fragments": 932,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseococcus pinisoli",
                "strain": "strain=XZZS9",
                "accession": "GCA_018413645.1",
                "taxid": 2835040,
                "species_taxid": 2835040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6703,
                "matched_fragments": 713,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseococcus microcysteis",
                "strain": "strain=NIBR12",
                "accession": "GCA_014764365.1",
                "taxid": 2771361,
                "species_taxid": 2771361,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.668,
                "matched_fragments": 751,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovarius lipocyclicus",
                "strain": "strain=CCUG 44693",
                "accession": "GCA_009900765.1",
                "taxid": 268410,
                "species_taxid": 268410,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5388,
                "matched_fragments": 728,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas lacus",
                "strain": "strain=CGMCC 1.3617",
                "accession": "GCA_014644535.1",
                "taxid": 287609,
                "species_taxid": 287609,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4312,
                "matched_fragments": 853,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas marmotae",
                "strain": "strain=1318",
                "accession": "GCA_017654485.1",
                "taxid": 2768161,
                "species_taxid": 2768161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4306,
                "matched_fragments": 694,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas haemaphysalidis",
                "strain": "strain=546",
                "accession": "GCA_017355405.1",
                "taxid": 2768162,
                "species_taxid": 2768162,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.345,
                "matched_fragments": 744,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoroseicyclus tamaricis",
                "strain": "strain=CLL3-39",
                "accession": "GCA_012070395.1",
                "taxid": 2705421,
                "species_taxid": 2705421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7124,
                "matched_fragments": 299,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoroseicyclus tamaricis",
                "strain": "strain=CLL3-39",
                "accession": "GCA_010435925.1",
                "taxid": 2705421,
                "species_taxid": 2705421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7118,
                "matched_fragments": 299,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium xanthum",
                "strain": "strain=NL9",
                "accession": "GCA_019737615.1",
                "taxid": 1387165,
                "species_taxid": 1387165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.68,
                "matched_fragments": 170,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodobacter thermarum",
                "strain": "strain=YIM 73036",
                "accession": "GCA_003574395.1",
                "taxid": 2670345,
                "species_taxid": 2670345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.539,
                "matched_fragments": 192,
                "total_fragments": 2045,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004353985.1",
                "gtdb_species": "s__Paracraurococcus ruber",
                "ani": 100.0,
                "matched_fragments": 2023,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Paracraurococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004343615.1",
                "gtdb_species": "s__Paracraurococcus sp004343615",
                "ani": 84.5276,
                "matched_fragments": 1219,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Paracraurococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003258945.1",
                "gtdb_species": "s__Paracraurococcus frigidaeris",
                "ani": 84.0172,
                "matched_fragments": 1260,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Paracraurococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004355005.1",
                "gtdb_species": "s__Paracraurococcus ruber_A",
                "ani": 83.8742,
                "matched_fragments": 1345,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Paracraurococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013112485.1",
                "gtdb_species": "s__Paracraurococcus sp013112485",
                "ani": 83.7861,
                "matched_fragments": 1256,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Paracraurococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008360935.1",
                "gtdb_species": "s__Siccirubricoccus phaeus",
                "ani": 81.9694,
                "matched_fragments": 1185,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Siccirubricoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014283215.1",
                "gtdb_species": "s__Siccirubricoccus deserti",
                "ani": 81.893,
                "matched_fragments": 1130,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Siccirubricoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016775475.1",
                "gtdb_species": "s__Belnapia sp016775475",
                "ani": 81.7476,
                "matched_fragments": 1156,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Belnapia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_019084075.1",
                "gtdb_species": "s__G192 sp019084075",
                "ani": 81.1952,
                "matched_fragments": 1075,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__G192",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014764365.1",
                "gtdb_species": "s__Roseococcus sp014764365",
                "ani": 78.6816,
                "matched_fragments": 749,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012070395.1",
                "gtdb_species": "s__CLL3-39 sp012070395",
                "ani": 75.6957,
                "matched_fragments": 303,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__CLL3-39",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017744605.1",
                "gtdb_species": "s__Sphingobium sp017744605",
                "ani": 75.5076,
                "matched_fragments": 127,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017745115.1",
                "gtdb_species": "s__Sphingobium sp017745115",
                "ani": 75.4604,
                "matched_fragments": 107,
                "total_fragments": 2045,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Paracraurococcus",
        "ruber"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}