{ "type": "genome", "identifier": "GCF_004354555.1", "organism": "Leuconostoc citreum", "title": "Leuconostoc citreum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Carlsberg Research Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004354555.1", "bioproject": "PRJNA224116", "biosample": "SAMN08555276", "wgs_master": "PUFH00000000.1", "refseq_category": "na", "taxid": "33964", "species_taxid": "33964", "organism_name": "Leuconostoc citreum", "infraspecific_name": "strain=ATCC 49370", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/18", "asm_name": "ASM435455v1", "asm_submitter": "Carlsberg Research Laboratory", "gbrs_paired_asm": "GCA_004354555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/354/555/GCF_004354555.1_ASM435455v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1844954", "genome_size_ungapped": "1844954", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004354555.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "1882", "protein_coding_gene_count": "1769", "non_coding_gene_count": "102", "pubmed_id": "30830251" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-18", "dateModified": "2019-03-18", "datePublished": "2019-03-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Leuconostoc citreum" ], "sample_taxid": [ "33964" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], 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"conclusive" }, { "organism_name": "Leuconostoc holzapfelii", "strain": "strain=JCM 16942", "accession": "GCA_019655995.1", "taxid": 434464, "species_taxid": 434464, "relation_to_type": "type", "validated": true, "ani": 79.7726, "matched_fragments": 201, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc holzapfelii", "strain": "strain=CCUG 54536", "accession": "GCA_012396485.1", "taxid": 434464, "species_taxid": 434464, "relation_to_type": "type", "validated": true, "ani": 79.7062, "matched_fragments": 204, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc lactis", "strain": "strain=JCM 6123", "accession": "GCA_019656035.1", "taxid": 1246, "species_taxid": 1246, "relation_to_type": "type", "validated": true, "ani": 79.6368, "matched_fragments": 195, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc miyukkimchii", 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"accession": "GCA_014651235.1", "taxid": 1246, "species_taxid": 1246, "relation_to_type": "type", "validated": true, "ani": 79.3531, "matched_fragments": 202, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc gelidum subsp. aenigmaticum", "strain": "strain=DSM 19375", "accession": "GCA_020089505.1", "taxid": 1607837, "species_taxid": 1244, "relation_to_type": "type", "validated": true, "ani": 79.3503, "matched_fragments": 215, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc gelidum subsp. gasicomitatum", "strain": "strain=NBRC 113245", "accession": "GCA_019655955.1", "taxid": 115778, "species_taxid": 1244, "relation_to_type": "type", "validated": true, "ani": 79.263, "matched_fragments": 220, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc gelidum subsp. gelidum", "strain": "strain=KCTC 3527", "accession": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Leuconostoc", "citreum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }