{ "type": "genome", "identifier": "GCF_004354615.1", "organism": "Lactobacillus delbrueckii subsp. jakobsenii", "title": "Lactobacillus delbrueckii subsp. jakobsenii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Carlsberg Research Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004354615.1", "bioproject": "PRJNA224116", "biosample": "SAMN08555167", "wgs_master": "PUFG00000000.1", "refseq_category": "na", "taxid": "1537158", "species_taxid": "1584", "organism_name": "Lactobacillus delbrueckii subsp. jakobsenii", "infraspecific_name": "strain=DSM 26046", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/18", "asm_name": "ASM435461v1", "asm_submitter": "Carlsberg Research Laboratory", "gbrs_paired_asm": "GCA_004354615.1", "paired_asm_comp": "identical", "ftp_path": 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"sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "0.505 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1781187", "Number of Sequences": "69", "Longest Sequences (bp)": "212480", "N50 (bp)": "74016", "Gap Ratio (%)": "0.020941", "GCcontent (%)": "50.1", "Number of CDSs": "1738", "Average Protein Length": "289.7", "Coding Ratio (%)": "84.8", "Number of rRNAs": "10", "Number of tRNAs": "103", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactobacillus delbrueckii subsp. jakobsenii", "strain": "strain=DSM 26046", "accession": "GCA_004354615.1", 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82.1097, "matched_fragments": 364, "total_fragments": 563, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.84", "min_intra_species_ani": "97.67", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000615445.1", "gtdb_species": "s__Lactobacillus hamsteri", "ani": 78.3271, "matched_fragments": 55, "total_fragments": 563, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.795, "doubling_h": 0.0, "growth_tmp": 37.889, 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