{
    "type": "genome",
    "identifier": "GCF_004354645.1",
    "organism": "Leuconostoc fallax",
    "title": "Leuconostoc fallax",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Carlsberg Research Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004354645.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08555278",
        "wgs_master": "PUFI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1251",
        "species_taxid": "1251",
        "organism_name": "Leuconostoc fallax",
        "infraspecific_name": "strain=ATCC 700006",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/18",
        "asm_name": "ASM435464v1",
        "asm_submitter": "Carlsberg Research Laboratory",
        "gbrs_paired_asm": "GCA_004354645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/354/645/GCF_004354645.1_ASM435464v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1660517",
        "genome_size_ungapped": "1660263",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004354645.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "1702",
        "protein_coding_gene_count": "1592",
        "non_coding_gene_count": "104",
        "pubmed_id": "30830251"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-18",
    "dateModified": "2019-03-18",
    "datePublished": "2019-03-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leuconostoc fallax"
        ],
        "sample_taxid": [
            "1251"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Denmark"
        ],
        "sample_host_location_id": [],
        "data_size": "0.467 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1660517",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "480020",
        "N50 (bp)": "273258",
        "Gap Ratio (%)": "0.015296",
        "GCcontent (%)": "37.7",
        "Number of CDSs": "1605",
        "Average Protein Length": "302.2",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "15",
        "Number of tRNAs": "86",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Leuconostoc fallax",
                "strain": "strain=ATCC 700006",
                "accession": "GCA_004354645.1",
                "taxid": 1251,
                "species_taxid": 1251,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 542,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leuconostoc fallax",
                "strain": "strain=KCTC 3537",
                "accession": "GCA_000165675.2",
                "taxid": 1251,
                "species_taxid": 1251,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8994,
                "matched_fragments": 527,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leuconostoc pseudomesenteroides",
                "strain": "strain=FDAARGOS_1003",
                "accession": "GCA_016127255.1",
                "taxid": 33968,
                "species_taxid": 33968,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.5669,
                "matched_fragments": 102,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc mesenteroides",
                "strain": "strain=NCTC12954",
                "accession": "GCA_900461615.1",
                "taxid": 1245,
                "species_taxid": 1245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4483,
                "matched_fragments": 118,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc mesenteroides subsp. jonggajibkimchii",
                "strain": "strain=DRC1506",
                "accession": "GCA_001886915.1",
                "taxid": 2026657,
                "species_taxid": 1245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2569,
                "matched_fragments": 114,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc gelidum subsp. gasicomitatum",
                "strain": "strain=type strain: LMG 18811",
                "accession": "GCA_000196855.1",
                "taxid": 115778,
                "species_taxid": 1244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1953,
                "matched_fragments": 125,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc kimchii",
                "strain": "strain=IMSNU 11154",
                "accession": "GCA_000092505.1",
                "taxid": 136609,
                "species_taxid": 136609,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7442,
                "matched_fragments": 123,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc pseudomesenteroides",
                "strain": "strain=NCDO 768",
                "accession": "GCA_012396745.1",
                "taxid": 33968,
                "species_taxid": 33968,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7016,
                "matched_fragments": 101,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc gelidum subsp. gasicomitatum",
                "strain": "strain=NBRC 113245",
                "accession": "GCA_019655955.1",
                "taxid": 115778,
                "species_taxid": 1244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4816,
                "matched_fragments": 120,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc mesenteroides subsp. mesenteroides",
                "strain": "strain=NBRC 100496",
                "accession": "GCA_007990165.1",
                "taxid": 33967,
                "species_taxid": 1245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1837,
                "matched_fragments": 113,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc gelidum subsp. aenigmaticum",
                "strain": "strain=DSM 19375",
                "accession": "GCA_020089505.1",
                "taxid": 1607837,
                "species_taxid": 1244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1789,
                "matched_fragments": 106,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc litchii",
                "strain": "strain=MB7",
                "accession": "GCA_008107645.1",
                "taxid": 1981069,
                "species_taxid": 1981069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1583,
                "matched_fragments": 116,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc inhae",
                "strain": "strain=DSM 15101",
                "accession": "GCA_019656015.1",
                "taxid": 178001,
                "species_taxid": 178001,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.0256,
                "matched_fragments": 118,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc rapi",
                "strain": "strain=DSM 27776",
                "accession": "GCA_016908715.1",
                "taxid": 1406906,
                "species_taxid": 1406906,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9869,
                "matched_fragments": 118,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc gelidum subsp. aenigmaticum",
                "strain": "strain=DSM 19375",
                "accession": "GCA_019655935.1",
                "taxid": 1607837,
                "species_taxid": 1244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8611,
                "matched_fragments": 103,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000165675.1",
                "gtdb_species": "s__Leuconostoc_B fallax",
                "ani": 99.8994,
                "matched_fragments": 527,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.83",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004354555.1",
                "gtdb_species": "s__Leuconostoc citreum",
                "ani": 79.3525,
                "matched_fragments": 106,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "98.68",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 33,
                "status": "-"
            },
            {
                "accession": "GCF_000014445.1",
                "gtdb_species": "s__Leuconostoc mesenteroides",
                "ani": 79.3419,
                "matched_fragments": 115,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "97.34",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 89,
                "status": "-"
            },
            {
                "accession": "GCF_009676745.1",
                "gtdb_species": "s__Leuconostoc mesenteroides_B",
                "ani": 79.0167,
                "matched_fragments": 114,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000092505.1",
                "gtdb_species": "s__Leuconostoc kimchii",
                "ani": 78.866,
                "matched_fragments": 124,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.55",
                "min_intra_species_ani": "99.53",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014207505.1",
                "gtdb_species": "s__Leuconostoc carnosum",
                "ani": 78.8533,
                "matched_fragments": 118,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_014634745.1",
                "gtdb_species": "s__Leuconostoc pseudomesenteroides",
                "ani": 78.6648,
                "matched_fragments": 96,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "96.85",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_012396485.1",
                "gtdb_species": "s__Leuconostoc holzapfelii",
                "ani": 78.3585,
                "matched_fragments": 98,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008107645.1",
                "gtdb_species": "s__Leuconostoc litchii",
                "ani": 78.1461,
                "matched_fragments": 117,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016908715.1",
                "gtdb_species": "s__Leuconostoc rapi",
                "ani": 77.9976,
                "matched_fragments": 117,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000166735.2",
                "gtdb_species": "s__Leuconostoc inhae",
                "ani": 77.9532,
                "matched_fragments": 93,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_000166715.1",
                "gtdb_species": "s__Leuconostoc gelidum",
                "ani": 77.7788,
                "matched_fragments": 106,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "98.75",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 25.0,
        "optimum_ph": 5.899,
        "genome_size": 1638971.0,
        "gc_content": 38.824,
        "coding_genes": 1785.127,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 67.495,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Leuconostoc",
        "fallax"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}