{ "type": "genome", "identifier": "GCF_004355225.1", "organism": "Flavobacterium nackdongense", "title": "Flavobacterium nackdongense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "NNIBR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004355225.1", "bioproject": "PRJNA224116", "biosample": "SAMN11098580", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2547394", "species_taxid": "2547394", "organism_name": "Flavobacterium nackdongense", "infraspecific_name": "strain=GS13", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/19", "asm_name": "ASM435522v1", "asm_submitter": "NNIBR", "gbrs_paired_asm": "GCA_004355225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/355/225/GCF_004355225.1_ASM435522v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4217227", "genome_size_ungapped": "4217227", "gc_percent": "36.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004355225.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3544", "protein_coding_gene_count": "3472", "non_coding_gene_count": "59", "pubmed_id": "31745602" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-19", "dateModified": "2019-03-19", "datePublished": "2019-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium nackdongense" ], "sample_taxid": [ "2547394" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Sangju" ], "sample_host_location_id": [], "data_size": "1.176 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4217227", "Number of Sequences": "1", "Longest Sequences (bp)": "4217227", "N50 (bp)": "4217227", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.2", "Number of CDSs": "3471", "Average Protein Length": "356.7", "Coding Ratio (%)": "88.1", "Number of rRNAs": "9", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium nackdongense", "strain": "strain=GS13", "accession": "GCA_004355225.1", "taxid": 2547394, "species_taxid": 2547394, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1405, "total_fragments": 1405, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 82.5568, "matched_fragments": 783, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 81.7719, "matched_fragments": 707, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluvii", "strain": "strain=DSM 19978", "accession": "GCA_900129545.1", "taxid": 468056, "species_taxid": 468056, "relation_to_type": "type", "validated": true, "ani": 80.6402, "matched_fragments": 621, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cellulosilyticum", "strain": "strain=AR-3-4", "accession": "GCA_004349355.1", "taxid": 2541731, "species_taxid": 2541731, "relation_to_type": "type", "validated": true, "ani": 79.3362, "matched_fragments": 515, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 78.6545, "matched_fragments": 418, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 78.5484, "matched_fragments": 383, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 78.4128, "matched_fragments": 361, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 78.2831, "matched_fragments": 404, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.9688, "matched_fragments": 272, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium araucananum", "strain": "strain=DSM 24704", "accession": "GCA_002222055.1", "taxid": 946678, "species_taxid": 946678, "relation_to_type": "type", "validated": true, "ani": 77.8127, "matched_fragments": 293, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 77.8125, "matched_fragments": 289, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 77.5721, "matched_fragments": 284, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.3165, "matched_fragments": 162, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 77.1289, "matched_fragments": 201, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004355225.1", "gtdb_species": "s__Flavobacterium nackdongense", "ani": 100.0, "matched_fragments": 1405, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": 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"thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "nackdongense" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }