{ "type": "genome", "identifier": "GCF_004358035.1", "organism": "Algoriphagus aquimaris", "title": "Algoriphagus aquimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyonggi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004358035.1", "bioproject": "PRJNA224116", "biosample": "SAMN11098717", "wgs_master": "SMUW00000000.1", "refseq_category": "reference genome", "taxid": "2547398", "species_taxid": "2547398", "organism_name": "Algoriphagus aquimaris", "infraspecific_name": "strain=F21", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/19", "asm_name": "ASM435803v1", "asm_submitter": "Kyonggi University", "gbrs_paired_asm": "GCA_004358035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/358/035/GCF_004358035.1_ASM435803v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4338560", "genome_size_ungapped": "4338540", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004358035.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3823", "protein_coding_gene_count": "3768", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-19", "dateModified": "2019-03-19", "datePublished": "2019-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Algoriphagus aquimaris" ], "sample_taxid": [ "2547398" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Pohang" ], "sample_host_location_id": [], "data_size": "1.234 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4338560", "Number of Sequences": "37", "Longest Sequences (bp)": "688580", "N50 (bp)": "326923", "Gap Ratio (%)": "0.000461", "GCcontent (%)": "41.9", "Number of CDSs": "3709", "Average Protein Length": "348.2", "Coding Ratio (%)": "89.3", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus aquimaris", "strain": "strain=F21", "accession": "GCA_004358035.1", "taxid": 2547398, "species_taxid": 2547398, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1429, "total_fragments": 1430, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Algoriphagus formosus", "strain": "strain=XAY3209", "accession": "GCA_002807035.1", "taxid": 2007308, "species_taxid": 2007308, "relation_to_type": "type", "validated": true, "ani": 97.5533, "matched_fragments": 1335, "total_fragments": 1430, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Algoriphagus marincola", "strain": "strain=DSM 16067", "accession": "GCA_000429405.1", "taxid": 264027, "species_taxid": 264027, "relation_to_type": "type", "validated": true, "ani": 93.2753, "matched_fragments": 1254, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus faecimaris", "strain": "strain=JCM 16561", "accession": "GCA_002150585.1", "taxid": 686796, "species_taxid": 686796, "relation_to_type": "type", "validated": true, "ani": 78.6133, "matched_fragments": 366, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus kandeliae", "strain": "strain=XY-J91", "accession": "GCA_004571135.1", "taxid": 2562278, "species_taxid": 2562278, "relation_to_type": "type", "validated": true, "ani": 78.4536, "matched_fragments": 466, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus ornithinivorans", "strain": "strain=DSM 15282", "accession": "GCA_900115305.1", "taxid": 226506, "species_taxid": 226506, "relation_to_type": "type", "validated": true, "ani": 78.2509, "matched_fragments": 298, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus hitonicola", "strain": "strain=DSM 19315", "accession": "GCA_900113375.1", "taxid": 435880, "species_taxid": 435880, "relation_to_type": "type", "validated": true, "ani": 77.7076, "matched_fragments": 339, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=CGMCC 1.11027", "accession": "GCA_004366575.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 77.3444, "matched_fragments": 278, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=DSM 25035", "accession": "GCA_900148515.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 77.3433, "matched_fragments": 279, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus litoralis", "strain": "strain=DSL-12", "accession": "GCA_003259255.1", "taxid": 2202829, "species_taxid": 2202829, "relation_to_type": "type", "validated": true, "ani": 77.2259, "matched_fragments": 190, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus locisalis", "strain": "strain=DSM 23445", "accession": "GCA_900116615.1", "taxid": 305507, "species_taxid": 305507, "relation_to_type": "type", "validated": true, "ani": 76.7471, "matched_fragments": 173, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus antarcticus", "strain": "strain=DSM 15986", "accession": "GCA_003387655.1", "taxid": 238540, "species_taxid": 238540, "relation_to_type": "type", "validated": true, "ani": 76.4899, "matched_fragments": 152, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus antarcticus", "strain": "strain=DSM 15986", "accession": "GCA_002150685.1", "taxid": 238540, "species_taxid": 238540, "relation_to_type": "type", "validated": true, "ani": 76.476, "matched_fragments": 152, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella kenyensis", "strain": "strain=DSM 46651", "accession": "GCA_022549675.1", "taxid": 1472724, "species_taxid": 1472724, "relation_to_type": "type", "validated": true, "ani": 76.2514, "matched_fragments": 79, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium roseum", "strain": "strain=SYSU L10180", "accession": "GCA_010119225.1", "taxid": 2666137, "species_taxid": 2666137, "relation_to_type": "type", "validated": true, "ani": 75.8672, "matched_fragments": 57, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium salsum", "strain": "strain=SYSU L10167", "accession": "GCA_010119245.1", "taxid": 2666329, "species_taxid": 2666329, "relation_to_type": "type", "validated": true, "ani": 75.8635, "matched_fragments": 58, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002807035.1", "gtdb_species": "s__Algoriphagus formosus", 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