{ "type": "genome", "identifier": "GCF_004358095.2", "organism": "Seonamhaeicola sediminis", "title": "Seonamhaeicola sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004358095.2", "bioproject": "PRJNA224116", "biosample": "SAMN11087391", "wgs_master": "SMZJ00000000.2", "refseq_category": "reference genome", "taxid": "2528206", "species_taxid": "2528206", "organism_name": "Seonamhaeicola sediminis", "infraspecific_name": "strain=W255", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/04", "asm_name": "ASM435809v2", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_004358095.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/358/095/GCF_004358095.2_ASM435809v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3537147", "genome_size_ungapped": "3537147", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004358095.2-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3022", "protein_coding_gene_count": "2959", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-04", "dateModified": "2019-08-04", "datePublished": "2019-08-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Seonamhaeicola sediminis" ], "sample_taxid": [ "2528206" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Shandong" ], "sample_host_location_id": [], "data_size": "0.987 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3537147", "Number of Sequences": "50", "Longest Sequences (bp)": "759981", "N50 (bp)": "464978", "Gap Ratio (%)": "0.000622", "GCcontent (%)": "33.5", "Number of CDSs": "2968", "Average Protein Length": "357.5", "Coding Ratio (%)": "90.0", "Number of rRNAs": "4", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Seonamhaeicola aphaedonensis", "strain": "strain=CECT 8487", "accession": "GCA_003386195.1", "taxid": 1461338, "species_taxid": 1461338, "relation_to_type": "type", "validated": true, "ani": 86.8006, "matched_fragments": 952, "total_fragments": 1158, "ani_threshold": 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"GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.9482, "matched_fragments": 353, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 77.9149, "matched_fragments": 373, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.8491, "matched_fragments": 361, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 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