{ "type": "genome", "identifier": "GCF_004358205.1", "organism": "Bacillus salipaludis", "title": "Bacillus salipaludis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Key Laboratory of Microbial Resources Collection and Preservation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004358205.1", "bioproject": "PRJNA224116", "biosample": "SAMN11124436", "wgs_master": "SMYO00000000.1", "refseq_category": "reference genome", "taxid": "2547811", "species_taxid": "2547811", "organism_name": "Bacillus salipaludis", "infraspecific_name": "strain=WN066", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/19", "asm_name": "ASM435820v1", "asm_submitter": "Key Laboratory of Microbial Resources Collection and Preservation", "gbrs_paired_asm": "GCA_004358205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/358/205/GCF_004358205.1_ASM435820v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6213503", "genome_size_ungapped": "6213503", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "100", "contig_count": "100", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004358205.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "6287", "protein_coding_gene_count": "5958", "non_coding_gene_count": "196", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-19", "dateModified": "2019-03-19", "datePublished": "2019-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillus salipaludis" ], "sample_taxid": [ "2547811" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Tianjin" ], "sample_host_location_id": [], "data_size": "1.759 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6213503", "Number of Sequences": "100", "Longest Sequences (bp)": "574612", "N50 (bp)": "465434", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.6", "Number of CDSs": "6089", "Average Protein Length": "278.2", "Coding Ratio (%)": "81.8", "Number of rRNAs": "14", "Number of tRNAs": "150", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacillus salipaludis", "strain": "strain=WN066", "accession": "GCA_004358205.1", "taxid": 2547811, "species_taxid": 2547811, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2015, "total_fragments": 2019, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neobacillus massiliamazoniensis", "strain": "strain=LF1", "accession": "GCA_001048695.1", "taxid": 1499688, "species_taxid": 1499688, "relation_to_type": "type", "validated": true, "ani": 79.1324, "matched_fragments": 494, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus cucumis", "strain": "strain=DSM 101566", "accession": "GCA_016908975.1", "taxid": 1740721, "species_taxid": 1740721, "relation_to_type": "type", "validated": true, "ani": 78.8934, "matched_fragments": 509, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus citreus", "strain": "strain=FJAT-50051", "accession": "GCA_018343545.2", "taxid": 2833578, "species_taxid": 2833578, "relation_to_type": "type", "validated": true, "ani": 78.7381, "matched_fragments": 402, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus soli", "strain": "strain=DSM 15604", "accession": "GCA_002335815.1", "taxid": 220688, "species_taxid": 220688, "relation_to_type": "type", "validated": true, "ani": 78.6628, "matched_fragments": 483, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus bataviensis", "strain": "strain=LMG 21833", "accession": "GCA_000307875.1", "taxid": 220685, "species_taxid": 220685, "relation_to_type": "type", "validated": true, "ani": 78.6125, "matched_fragments": 428, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus jeddahensis", "strain": "strain=JCE", "accession": "GCA_000612625.1", "taxid": 1461580, "species_taxid": 1461580, "relation_to_type": "type", "validated": true, "ani": 78.5549, "matched_fragments": 391, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus novalis", "strain": "strain=FJAT-14227", "accession": "GCA_001636395.1", "taxid": 220687, "species_taxid": 220687, "relation_to_type": "type", "validated": true, "ani": 78.5486, "matched_fragments": 482, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus novalis", "strain": "strain=NBRC 102450", "accession": "GCA_001591805.1", "taxid": 220687, "species_taxid": 220687, "relation_to_type": "type", "validated": true, "ani": 78.4833, "matched_fragments": 471, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus soli", "strain": "strain=NBRC 102451", "accession": "GCA_001591665.1", "taxid": 220688, "species_taxid": 220688, "relation_to_type": "type", "validated": true, "ani": 78.4773, "matched_fragments": 463, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus vireti", "strain": "strain=DSM 15602", "accession": "GCA_001026695.1", "taxid": 220686, "species_taxid": 220686, "relation_to_type": "type", "validated": true, "ani": 78.4303, "matched_fragments": 447, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus vireti", "strain": "strain=LMG 21834", "accession": "GCA_000508325.2", "taxid": 220686, "species_taxid": 220686, "relation_to_type": "type", "validated": true, "ani": 78.3394, "matched_fragments": 422, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus mesonae", "strain": "strain=FJAT-13985", "accession": "GCA_001636315.1", "taxid": 1193713, "species_taxid": 1193713, "relation_to_type": "type", "validated": true, "ani": 78.3162, "matched_fragments": 427, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus kokaensis", "strain": "strain=LOB 377", "accession": "GCA_014656545.1", "taxid": 2759023, "species_taxid": 2759023, "relation_to_type": "type", "validated": true, "ani": 78.3159, "matched_fragments": 397, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus niacini", "strain": "strain=NBRC 15566", "accession": "GCA_001591505.1", "taxid": 86668, "species_taxid": 86668, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2859, "matched_fragments": 410, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus dielmonensis", "strain": "strain=FF4", "accession": "GCA_000612665.1", "taxid": 1347369, "species_taxid": 1347369, "relation_to_type": "type", "validated": true, "ani": 78.1256, "matched_fragments": 275, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus solani", "strain": "strain=FJAT-18043", "accession": "GCA_001420595.1", "taxid": 1637975, "species_taxid": 1637975, "relation_to_type": "type", "validated": true, "ani": 77.8036, "matched_fragments": 201, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 77.3251, "matched_fragments": 179, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus horneckiae", "strain": "strain=1P01SC", "accession": "GCA_002835735.1", "taxid": 549687, "species_taxid": 549687, "relation_to_type": "type", "validated": true, "ani": 77.0144, "matched_fragments": 165, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_025263665.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 76.89, "matched_fragments": 142, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus vallismortis", "strain": "strain=DSM 11031", "accession": "GCA_004116955.1", "taxid": 72361, "species_taxid": 72361, "relation_to_type": "type", "validated": true, "ani": 76.8209, "matched_fragments": 66, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus harenae", "strain": "strain=Y40", "accession": "GCA_013343715.1", "taxid": 2213203, "species_taxid": 2213203, "relation_to_type": "type", "validated": true, "ani": 76.8172, "matched_fragments": 134, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus spizizenii", "strain": "strain=NBRC 101239", "accession": "GCA_007989785.1", "taxid": 96241, "species_taxid": 96241, "relation_to_type": "type", "validated": true, "ani": 76.727, "matched_fragments": 64, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_022630575.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 76.6051, "matched_fragments": 99, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lederbergia panacisoli", "strain": "strain=KACC 17503", "accession": "GCA_024626525.1", "taxid": 1255251, "species_taxid": 1255251, "relation_to_type": "type", "validated": true, "ani": 76.2816, "matched_fragments": 99, "total_fragments": 2019, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004358205.1", "gtdb_species": "s__Neobacillus salipaludis", "ani": 100.0, "matched_fragments": 2015, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000482325.1", "gtdb_species": "s__Neobacillus sp000482325", "ani": 94.7353, "matched_fragments": 1558, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016107705.1", "gtdb_species": "s__Neobacillus cucumis_B", "ani": 93.4175, "matched_fragments": 1626, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001866655.1", "gtdb_species": "s__Neobacillus sp001866655", "ani": 84.5625, "matched_fragments": 1301, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019219025.1", "gtdb_species": "s__Neobacillus sp019219025", "ani": 79.1843, "matched_fragments": 559, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001048695.1", "gtdb_species": "s__Neobacillus massiliamazoniensis", "ani": 79.1622, "matched_fragments": 489, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002860255.1", "gtdb_species": "s__Neobacillus cucumis_A", "ani": 78.6791, "matched_fragments": 446, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009928415.1", "gtdb_species": "s__Neobacillus sp009928415", "ani": 78.4946, "matched_fragments": 427, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001591665.1", "gtdb_species": "s__Neobacillus soli", "ani": 78.4482, "matched_fragments": 466, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011250555.1", "gtdb_species": "s__Neobacillus sp011250555", "ani": 78.3697, "matched_fragments": 437, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004124315.1", "gtdb_species": "s__Bacillus cabrialesii", "ani": 77.136, "matched_fragments": 64, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.72", "min_intra_species_ani": "96.66", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_002835735.1", "gtdb_species": "s__Cytobacillus horneckiae", "ani": 77.078, "matched_fragments": 165, "total_fragments": 2019, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.22", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.176, "cell_length": 0.387, "doubling_h": -0.134, "growth_tmp": 31.412, "optimum_tmp": 33.64, "optimum_ph": 7.746, "genome_size": 4544138.117, "gc_content": 40.577, "coding_genes": 4334.002, "rRNA16S_genes": 9.859, "tRNA_genes": 88.223, "gram_stain": 0.993, "sporulation": 0.975, "motility": 0.841, "range_salinity": 0.6, "facultative_respiration": 0.16, "anaerobic_respiration": 0.011, "aerobic_respiration": 0.827, "mesophilic_range_tmp": 0.928, "thermophilic_range_tmp": 0.053, "psychrophilic_range_tmp": 0.017, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bacillus", "salipaludis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }