{ "type": "genome", "identifier": "GCF_004358325.1", "organism": "Periweissella cryptocerci", "title": "Periweissella cryptocerci", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004358325.1", "bioproject": "PRJNA224116", "biosample": "SAMN10737330", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2506420", "species_taxid": "2506420", "organism_name": "Periweissella cryptocerci", "infraspecific_name": "strain=26KH-42", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/20", "asm_name": "ASM435832v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_004358325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/358/325/GCF_004358325.1_ASM435832v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3020651", "genome_size_ungapped": "3020651", "gc_percent": "41.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004358325.1-RS_2024_04_14", "annotation_date": "2024-04-14", "total_gene_count": "2758", "protein_coding_gene_count": "2646", "non_coding_gene_count": "97", "pubmed_id": "31246166" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-20", "dateModified": "2019-03-20", "datePublished": "2019-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Periweissella cryptocerci" ], "sample_taxid": [ "2506420" ], "sample_host_organism": [ "Cryptocercus kyebangensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yangyang-gun" ], "sample_host_location_id": [], "data_size": "0.850 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3020651", "Number of Sequences": "1", "Longest Sequences (bp)": "3020651", "N50 (bp)": "3020651", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.1", "Number of CDSs": "2753", "Average Protein Length": "294.5", "Coding Ratio (%)": "80.5", "Number of rRNAs": "22", "Number of tRNAs": "73", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Periweissella cryptocerci", "strain": "strain=26KH-42", "accession": "GCA_004358325.1", "taxid": 2506420, "species_taxid": 2506420, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1006, "total_fragments": 1006, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Periweissella fabalis", "strain": "strain=CCUG 61472", "accession": "GCA_012396505.1", "taxid": 1070421, "species_taxid": 1070421, "relation_to_type": "type", "validated": true, "ani": 79.1789, "matched_fragments": 107, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Periweissella fabalis", "strain": "strain=LMG 26217", "accession": "GCA_023657345.1", "taxid": 1070421, "species_taxid": 1070421, "relation_to_type": "type", "validated": true, "ani": 79.0867, "matched_fragments": 106, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Periweissella fabaria", "strain": "strain=LMG 24289 substr. 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