{ "type": "genome", "identifier": "GCF_004358345.1", "organism": "Parashewanella spongiae", "title": "Parashewanella spongiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Institue of Ocean Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004358345.1", "bioproject": "PRJNA224116", "biosample": "SAMN11111039", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "342950", "species_taxid": "342950", "organism_name": "Parashewanella spongiae", "infraspecific_name": "strain=HJ039", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/20", "asm_name": "ASM435834v1", "asm_submitter": "Korea Institue of Ocean Science and Technology", "gbrs_paired_asm": "GCA_004358345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/358/345/GCF_004358345.1_ASM435834v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5468749", "genome_size_ungapped": "5468749", "gc_percent": "39.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004358345.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "4388", "protein_coding_gene_count": "4143", "non_coding_gene_count": "117", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-20", "dateModified": "2019-03-20", "datePublished": "2019-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Parashewanella spongiae" ], "sample_taxid": [ "342950" ], "sample_host_organism": [ "Marine sponge" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.512 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5468749", "Number of Sequences": "1", "Longest Sequences (bp)": "5468749", "N50 (bp)": "5468749", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.6", "Number of CDSs": "4289", "Average Protein Length": "338.9", "Coding Ratio (%)": "79.7", "Number of rRNAs": "22", "Number of tRNAs": "90", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parashewanella spongiae", "strain": "strain=HJ039", "accession": "GCA_004358345.1", "taxid": 342950, "species_taxid": 342950, 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}, { "organism_name": "Shewanella abyssi", "strain": "strain=DSM 17171", "accession": "GCA_023284025.1", "taxid": 311789, "species_taxid": 311789, "relation_to_type": "type", "validated": true, "ani": 77.6244, "matched_fragments": 133, "total_fragments": 1822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sairae", "strain": "strain=LMG 21408", "accession": "GCA_023283535.1", "taxid": 190310, "species_taxid": 190310, "relation_to_type": "type", "validated": true, "ani": 77.5218, "matched_fragments": 132, "total_fragments": 1822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea marina", "strain": "strain=KCTC 42731", "accession": "GCA_014656435.1", "taxid": 1673741, "species_taxid": 1673741, "relation_to_type": "type", "validated": true, "ani": 76.573, "matched_fragments": 55, "total_fragments": 1822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea profundi", "strain": 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