{ "type": "genome", "identifier": "GCF_004358675.1", "organism": "Meridianimarinicoccus aquatilis", "title": "Meridianimarinicoccus aquatilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "State Key Laboratory of Microbial", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004358675.1", "bioproject": "PRJNA224116", "biosample": "SAMN11125367", "wgs_master": "SMZO00000000.1", "refseq_category": "reference genome", "taxid": "2552766", "species_taxid": "2552766", "organism_name": "Meridianimarinicoccus aquatilis", "infraspecific_name": "strain=SM1902", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/20", "asm_name": "ASM435867v1", "asm_submitter": "State Key Laboratory of Microbial", "gbrs_paired_asm": "GCA_004358675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/358/675/GCF_004358675.1_ASM435867v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4226543", "genome_size_ungapped": "4226463", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "138", "contig_count": "138", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004358675.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4169", "protein_coding_gene_count": "3986", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-20", "dateModified": "2019-03-20", "datePublished": "2019-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Meridianimarinicoccus aquatilis" ], "sample_taxid": [ "2552766" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Yantai" ], "sample_host_location_id": [], "data_size": "1.203 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4226543", "Number of Sequences": "138", "Longest Sequences (bp)": "188207", "N50 (bp)": "69931", "Gap Ratio (%)": "0.002035", "GCcontent (%)": "58.2", "Number of CDSs": "4037", "Average Protein Length": "301.9", "Coding Ratio (%)": "86.5", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita geojedonensis", "strain": "strain=DSM 29432", "accession": "GCA_003002975.1", "taxid": 1123756, "species_taxid": 1123756, "relation_to_type": "type", "validated": true, "ani": 77.739, "matched_fragments": 176, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita geojedonensis", "strain": "strain=DPG-138", "accession": "GCA_002115805.1", "taxid": 1123756, "species_taxid": 1123756, "relation_to_type": "type", "validated": true, "ani": 77.7217, "matched_fragments": 171, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter italicus", "strain": "strain=CECT 7645", "accession": "GCA_001404195.1", "taxid": 481446, "species_taxid": 481446, "relation_to_type": "type", "validated": true, "ani": 77.7199, "matched_fragments": 136, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=cai42", "accession": "GCA_001620265.1", "taxid": 1335048, "species_taxid": 1335048, "relation_to_type": "type", "validated": true, "ani": 77.3273, "matched_fragments": 152, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=TW15", "accession": "GCA_000192475.2", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2265, "matched_fragments": 119, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola onchidii", "strain": "strain=XY-99", "accession": "GCA_004959925.1", "taxid": 2562279, "species_taxid": 2562279, "relation_to_type": "type", "validated": true, "ani": 77.1879, "matched_fragments": 152, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=DSM 29317", "accession": "GCA_003664205.1", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1872, "matched_fragments": 121, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.1294, "matched_fragments": 169, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax lentus", "strain": "strain=DSM 29430", "accession": "GCA_900156805.1", "taxid": 633194, "species_taxid": 633194, "relation_to_type": "type", "validated": true, "ani": 77.0756, "matched_fragments": 173, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, 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76.8328, "matched_fragments": 145, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius pelagivivens", "strain": "strain=CECT 8811", "accession": "GCA_900302485.1", "taxid": 1639690, "species_taxid": 1639690, "relation_to_type": "type", "validated": true, "ani": 76.8063, "matched_fragments": 130, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 76.7182, "matched_fragments": 162, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 76.7172, "matched_fragments": 154, 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"below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", "strain": "strain=HB172011", "accession": "GCA_006385685.1", "taxid": 2589815, "species_taxid": 2589815, "relation_to_type": "type", "validated": true, "ani": 76.3791, "matched_fragments": 74, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus onubensis", "strain": "strain=1011MAR3C25", "accession": "GCA_003591515.1", "taxid": 1675788, "species_taxid": 1675788, "relation_to_type": "type", "validated": true, "ani": 76.3156, "matched_fragments": 106, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004358675.1", "gtdb_species": "s__Fluviibacterium aquatile", "ani": 100.0, "matched_fragments": 1335, "total_fragments": 1346, "gtdb_taxonomy": 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