{ "type": "genome", "identifier": "GCF_004360145.1", "organism": "Aliiroseovarius marinus", "title": "Aliiroseovarius marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xinxiang Medical University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004360145.1", "bioproject": "PRJNA224116", "biosample": "SAMN10688474", "wgs_master": "SAIT00000000.1", "refseq_category": "reference genome", "taxid": "2500159", "species_taxid": "2500159", "organism_name": "Aliiroseovarius marinus", "infraspecific_name": "strain=A6024", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/22", "asm_name": "ASM436014v1", "asm_submitter": "Xinxiang Medical University", "gbrs_paired_asm": "GCA_004360145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/360/145/GCF_004360145.1_ASM436014v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3133413", "genome_size_ungapped": "3133400", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004360145.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3093", "protein_coding_gene_count": "3018", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-22", "dateModified": "2019-03-22", "datePublished": "2019-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Aliiroseovarius marinus" ], "sample_taxid": [ "2500159" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Rizhao" ], "sample_host_location_id": [], "data_size": "0.881 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3133413", "Number of Sequences": "33", "Longest Sequences (bp)": "668563", "N50 (bp)": "260699", "Gap Ratio (%)": "0.000415", "GCcontent (%)": "59.9", "Number of CDSs": "3039", "Average Protein Length": "311.0", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aliiroseovarius marinus", "strain": "strain=A6024", "accession": "GCA_004360145.1", "taxid": 2500159, "species_taxid": 2500159, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1028, "total_fragments": 1030, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aliiroseovarius pelagivivens", "strain": "strain=CECT 8811", "accession": "GCA_900302485.1", "taxid": 1639690, "species_taxid": 1639690, "relation_to_type": "type", "validated": true, "ani": 86.306, "matched_fragments": 876, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius halocynthiae", "strain": "strain=MA1-10", "accession": "GCA_007004645.1", "taxid": 985055, "species_taxid": 985055, "relation_to_type": "type", "validated": true, "ani": 84.4333, "matched_fragments": 769, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius zhejiangensis", "strain": "strain=KCTC 42443", "accession": "GCA_014656375.1", "taxid": 1632025, "species_taxid": 1632025, "relation_to_type": "type", "validated": true, "ani": 80.0555, "matched_fragments": 585, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius crassostreae", "strain": "strain=CV919-312", "accession": "GCA_001307765.1", "taxid": 154981, "species_taxid": 154981, "relation_to_type": "type", "validated": true, "ani": 79.7597, "matched_fragments": 457, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius crassostreae", "strain": "strain=DSM 16950", "accession": "GCA_900116725.1", "taxid": 154981, "species_taxid": 154981, "relation_to_type": "type", "validated": true, "ani": 79.702, "matched_fragments": 460, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius sediminilitoris", "strain": "strain=DSM 29439", "accession": "GCA_900109955.1", "taxid": 1173584, "species_taxid": 1173584, "relation_to_type": "type", "validated": true, "ani": 79.45, "matched_fragments": 540, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiruegeria litorea", "strain": "strain=CECT 7639", "accession": "GCA_900172225.1", "taxid": 1280831, "species_taxid": 1280831, "relation_to_type": "type", "validated": true, "ani": 78.2192, "matched_fragments": 339, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 77.8919, "matched_fragments": 222, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 77.6214, "matched_fragments": 202, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus limosus", "strain": "strain=JCM 17370", "accession": "GCA_009711185.1", "taxid": 913252, "species_taxid": 913252, "relation_to_type": "type", "validated": true, "ani": 77.4449, "matched_fragments": 222, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 77.2408, "matched_fragments": 284, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter leonis", "strain": "strain=306", "accession": "GCA_002087335.1", "taxid": 1144477, "species_taxid": 1144477, "relation_to_type": "type", "validated": true, "ani": 77.2379, "matched_fragments": 229, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus laeviglucosivorans", "strain": "strain=DSM 100094", 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"GCF_004360145.1", "gtdb_species": "s__Aliiroseovarius marinus", "ani": 100.0, "matched_fragments": 1028, "total_fragments": 1030, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_010500215.1", "gtdb_species": "s__Aliiroseovarius sp010500215", "ani": 88.9581, "matched_fragments": 874, "total_fragments": 1030, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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