{
    "type": "genome",
    "identifier": "GCF_004360155.1",
    "organism": "Paraglaciecola marina",
    "title": "Paraglaciecola marina",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Xinxiang Medical University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004360155.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10688364",
        "wgs_master": "SAIS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2500157",
        "species_taxid": "2500157",
        "organism_name": "Paraglaciecola marina",
        "infraspecific_name": "strain=D3211",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/22",
        "asm_name": "ASM436015v1",
        "asm_submitter": "Xinxiang Medical University",
        "gbrs_paired_asm": "GCA_004360155.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/360/155/GCF_004360155.1_ASM436015v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4638164",
        "genome_size_ungapped": "4638105",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "75",
        "contig_count": "91",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004360155.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "4170",
        "protein_coding_gene_count": "4084",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-22",
    "dateModified": "2019-03-22",
    "datePublished": "2019-03-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paraglaciecola marina"
        ],
        "sample_taxid": [
            "2500157"
        ],
        "sample_host_organism": [
            "brown seaweed"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Yantai, Yellow sea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.322 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4638164",
        "Number of Sequences": "75",
        "Longest Sequences (bp)": "745054",
        "N50 (bp)": "242717",
        "Gap Ratio (%)": "0.001272",
        "GCcontent (%)": "39.4",
        "Number of CDSs": "4102",
        "Average Protein Length": "331.2",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paraglaciecola marina",
                "strain": "strain=D3211",
                "accession": "GCA_004360155.1",
                "taxid": 2500157,
                "species_taxid": 2500157,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1511,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paraglaciecola aquimarina",
                "strain": "strain=GGW-M5",
                "accession": "GCA_021532655.1",
                "taxid": 1235557,
                "species_taxid": 1235557,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5322,
                "matched_fragments": 275,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraglaciecola psychrophila",
                "strain": "strain=170",
                "accession": "GCA_000347635.1",
                "taxid": 326544,
                "species_taxid": 326544,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2854,
                "matched_fragments": 249,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraglaciecola arctica",
                "strain": "strain=BSs20135",
                "accession": "GCA_000314995.1",
                "taxid": 1128911,
                "species_taxid": 1128911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2421,
                "matched_fragments": 329,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraglaciecola psychrophila",
                "strain": "strain=170",
                "accession": "GCA_000315075.1",
                "taxid": 326544,
                "species_taxid": 326544,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1689,
                "matched_fragments": 254,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraglaciecola hydrolytica",
                "strain": "strain=S66",
                "accession": "GCA_001565895.1",
                "taxid": 1799789,
                "species_taxid": 1799789,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6834,
                "matched_fragments": 181,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glaciecola nitratireducens",
                "strain": "strain=FR1064",
                "accession": "GCA_000226565.1",
                "taxid": 300231,
                "species_taxid": 300231,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4498,
                "matched_fragments": 67,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliiglaciecola lipolytica",
                "strain": "strain=E3",
                "accession": "GCA_000314975.1",
                "taxid": 477689,
                "species_taxid": 477689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4141,
                "matched_fragments": 108,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteromonas lipolytica",
                "strain": "strain=JW12",
                "accession": "GCA_001758465.1",
                "taxid": 1856405,
                "species_taxid": 1856405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3915,
                "matched_fragments": 69,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteromonas naphthalenivorans",
                "strain": "strain=SN2",
                "accession": "GCA_000213655.1",
                "taxid": 715451,
                "species_taxid": 715451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1498,
                "matched_fragments": 91,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraneptunicella aestuarii",
                "strain": "strain=NBU2194",
                "accession": "GCA_019900845.1",
                "taxid": 2831148,
                "species_taxid": 2831148,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6181,
                "matched_fragments": 66,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas espejiana",
                "strain": "strain=NBRC 102222",
                "accession": "GCA_007989585.1",
                "taxid": 28107,
                "species_taxid": 28107,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5895,
                "matched_fragments": 58,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas espejiana",
                "strain": "strain=ATCC 29659",
                "accession": "GCA_002221525.1",
                "taxid": 28107,
                "species_taxid": 28107,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5311,
                "matched_fragments": 63,
                "total_fragments": 1514,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004360155.1",
                "gtdb_species": "s__Paraglaciecola sp004360155",
                "ani": 100.0,
                "matched_fragments": 1511,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018861065.1",
                "gtdb_species": "s__Paraglaciecola arctica_B",
                "ani": 78.5524,
                "matched_fragments": 290,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009796765.1",
                "gtdb_species": "s__Paraglaciecola sp009796765",
                "ani": 78.5339,
                "matched_fragments": 308,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003232445.1",
                "gtdb_species": "s__Paraglaciecola arctica_A",
                "ani": 78.5116,
                "matched_fragments": 188,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002835935.1",
                "gtdb_species": "s__Paraglaciecola sp002835935",
                "ani": 78.3146,
                "matched_fragments": 265,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000347635.1",
                "gtdb_species": "s__Paraglaciecola psychrophila",
                "ani": 78.3008,
                "matched_fragments": 248,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000314995.1",
                "gtdb_species": "s__Paraglaciecola arctica",
                "ani": 78.2306,
                "matched_fragments": 330,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001758465.1",
                "gtdb_species": "s__Alteromonas lipolytica",
                "ani": 77.4119,
                "matched_fragments": 70,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001562115.1",
                "gtdb_species": "s__Alteromonas stellipolaris",
                "ani": 77.3614,
                "matched_fragments": 91,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000213655.1",
                "gtdb_species": "s__Alteromonas naphthalenivorans",
                "ani": 77.1223,
                "matched_fragments": 92,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.31",
                "min_intra_species_ani": "95.95",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_018100795.1",
                "gtdb_species": "s__Alteromonas sp018100795",
                "ani": 76.9387,
                "matched_fragments": 98,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014077505.1",
                "gtdb_species": "s__Cognaticolwellia sp014077505",
                "ani": 76.7446,
                "matched_fragments": 63,
                "total_fragments": 1514,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Cognaticolwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.151,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 20.0,
        "optimum_tmp": 19.416,
        "optimum_ph": 7.375,
        "genome_size": 5322743.96,
        "gc_content": 43.376,
        "coding_genes": 4796.667,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 59.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paraglaciecola",
        "marina"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}