{ "type": "genome", "identifier": "GCF_004361915.1", "organism": "Sediminibacterium goheungense", "title": "Sediminibacterium goheungense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004361915.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444150", "wgs_master": "SNWP00000000.1", "refseq_category": "reference genome", "taxid": "1086393", "species_taxid": "1086393", "organism_name": "Sediminibacterium goheungense", "infraspecific_name": "strain=DSM 28323", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/22", "asm_name": "ASM436191v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004361915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/361/915/GCF_004361915.1_ASM436191v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3857482", "genome_size_ungapped": "3857482", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004361915.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3358", "protein_coding_gene_count": "3302", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-22", "dateModified": "2019-03-22", "datePublished": "2019-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Sediminibacterium goheungense" ], "sample_taxid": [ "1086393" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.087 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3857482", "Number of Sequences": "18", "Longest Sequences (bp)": "1767879", "N50 (bp)": "1127750", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.9", "Number of CDSs": "3289", "Average Protein Length": "343.1", "Coding Ratio (%)": "87.8", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sediminibacterium goheungense", "strain": "strain=DSM 28323", "accession": "GCA_004361915.1", "taxid": 1086393, "species_taxid": 1086393, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1253, "total_fragments": 1277, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sediminibacterium ginsengisoli", "strain": "strain=DSM 22335", "accession": "GCA_900167075.1", "taxid": 413434, "species_taxid": 413434, "relation_to_type": "type", "validated": true, "ani": 77.5817, "matched_fragments": 221, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium roseum", "strain": "strain=SYL130", "accession": "GCA_009939005.1", "taxid": 1978412, "species_taxid": 1978412, "relation_to_type": "type", "validated": true, "ani": 77.3534, "matched_fragments": 145, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium soli", "strain": "strain=WSJ-3", "accession": "GCA_009939225.1", "taxid": 2698829, "species_taxid": 2698829, "relation_to_type": "type", "validated": true, "ani": 77.0465, "matched_fragments": 173, "total_fragments": 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}, { "organism_name": "Panacibacter ginsenosidivorans", "strain": "strain=Gsoil1550", "accession": "GCA_007971225.1", "taxid": 1813871, "species_taxid": 1813871, "relation_to_type": "type", "validated": true, "ani": 76.6384, "matched_fragments": 96, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas lacunae", "strain": "strain=DSM 21054", "accession": "GCA_900156765.1", "taxid": 477680, "species_taxid": 477680, "relation_to_type": "type", "validated": true, "ani": 76.4468, "matched_fragments": 98, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea flava", "strain": "strain=CCUG 51397", "accession": "GCA_001623405.1", "taxid": 714549, "species_taxid": 714549, "relation_to_type": "suspected-type", "validated": true, "ani": 76.339, "matched_fragments": 108, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas zeae", 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