{ "type": "genome", "identifier": "GCF_004362495.1", "organism": "Nocardia ignorata", "title": "Nocardia ignorata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004362495.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074772", "wgs_master": "SNXK00000000.1", "refseq_category": "reference genome", "taxid": "145285", "species_taxid": "145285", "organism_name": "Nocardia ignorata", "infraspecific_name": "strain=DSM 44496", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/22", "asm_name": "ASM436249v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004362495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/362/495/GCF_004362495.1_ASM436249v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7022989", "genome_size_ungapped": "7022546", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004362495.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "6684", "protein_coding_gene_count": "6528", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-22", "dateModified": "2019-03-22", "datePublished": "2019-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia ignorata" ], "sample_taxid": [ "145285" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.913 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7022989", "Number of Sequences": "26", "Longest Sequences (bp)": "2597438", "N50 (bp)": "566591", "Gap Ratio (%)": "0.006308", "GCcontent (%)": "67.7", "Number of CDSs": "6703", "Average Protein Length": "314.8", "Coding Ratio (%)": "90.1", "Number of rRNAs": "3", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia ignorata", "strain": "strain=DSM 44496", "accession": "GCA_004362495.1", "taxid": 145285, "species_taxid": 145285, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2321, "total_fragments": 2325, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardia ignorata", "strain": "strain=NBRC 108230", "accession": "GCA_001612905.1", "taxid": 145285, "species_taxid": 145285, "relation_to_type": "type", "validated": true, "ani": 99.9901, "matched_fragments": 2283, "total_fragments": 2325, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardia coubleae", "strain": "strain=NBRC 108252", "accession": "GCA_001612805.1", "taxid": 356147, "species_taxid": 356147, "relation_to_type": "type", "validated": true, "ani": 96.998, "matched_fragments": 1924, "total_fragments": 2325, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardia coubleae", "strain": "strain=DSM 44960", "accession": "GCA_012395945.1", "taxid": 356147, "species_taxid": 356147, "relation_to_type": "type", "validated": true, "ani": 96.9908, "matched_fragments": 1940, "total_fragments": 2325, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardia rosealba", "strain": "strain=NEAU-G4", "accession": "GCA_020216065.1", "taxid": 2878563, "species_taxid": 2878563, "relation_to_type": "type", "validated": true, "ani": 95.5251, "matched_fragments": 1853, "total_fragments": 2325, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardia caishijiensis", "strain": "strain=DSM 44831", "accession": "GCA_009858255.1", "taxid": 184756, "species_taxid": 184756, "relation_to_type": "type", "validated": true, "ani": 91.6473, "matched_fragments": 1751, "total_fragments": 2325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia caishijiensis", "strain": "strain=NBRC 108228", "accession": "GCA_001612825.1", "taxid": 184756, "species_taxid": 184756, "relation_to_type": "type", "validated": true, "ani": 91.6325, "matched_fragments": 1738, "total_fragments": 2325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia thailandica", "strain": "strain=NBRC 100428", "accession": 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