{ "type": "genome", "identifier": "GCF_004362825.1", "organism": "Labedaea rhizosphaerae", "title": "Labedaea rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004362825.1", "bioproject": "PRJNA224116", "biosample": "SAMN10864828", "wgs_master": "SNXZ00000000.1", "refseq_category": "reference genome", "taxid": "598644", "species_taxid": "598644", "organism_name": "Labedaea rhizosphaerae", "infraspecific_name": "strain=DSM 45361", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/22", "asm_name": "ASM436282v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004362825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/362/825/GCF_004362825.1_ASM436282v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8317180", "genome_size_ungapped": "8316796", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004362825.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "7820", "protein_coding_gene_count": "7690", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-22", "dateModified": "2019-03-22", "datePublished": "2019-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Labedaea rhizosphaerae" ], "sample_taxid": [ "598644" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ 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485602, "species_taxid": 485602, "relation_to_type": "type", "validated": true, "ani": 78.54, "matched_fragments": 1119, "total_fragments": 2763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis sacchari", "strain": "strain=DSM 44468", "accession": "GCA_900114035.1", "taxid": 115433, "species_taxid": 115433, "relation_to_type": "type", "validated": true, "ani": 78.4875, "matched_fragments": 916, "total_fragments": 2763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinophytocola oryzae", "strain": "strain=DSM 45499", "accession": "GCA_004364325.1", "taxid": 502181, "species_taxid": 502181, "relation_to_type": "type", "validated": true, "ani": 78.4326, "matched_fragments": 1101, "total_fragments": 2763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis magusensis", "strain": "strain=DSM 45510", "accession": "GCA_017875555.1", "taxid": 882444, "species_taxid": 882444, "relation_to_type": 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"matched_fragments": 947, "total_fragments": 2763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 78.26, "matched_fragments": 857, "total_fragments": 2763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix obliqua", "strain": "strain=SC076", "accession": "GCA_019375475.1", "taxid": 2861747, "species_taxid": 2861747, "relation_to_type": "type", "validated": true, "ani": 78.2435, "matched_fragments": 943, "total_fragments": 2763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea albidocapillata subsp. violacea", "strain": "strain=DSM 44796", "accession": "GCA_900100275.1", "taxid": 128104, "species_taxid": 40571, "relation_to_type": "type", "validated": true, "ani": 78.2197, "matched_fragments": 864, 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