{ "type": "genome", "identifier": "GCF_004363315.1", "organism": "Tepidicella xavieri", "title": "Tepidicella xavieri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004363315.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074868", "wgs_master": "SNYL00000000.1", "refseq_category": "reference genome", "taxid": "360241", "species_taxid": "360241", "organism_name": "Tepidicella xavieri", "infraspecific_name": "strain=DSM 19605", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/22", "asm_name": "ASM436331v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004363315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/363/315/GCF_004363315.1_ASM436331v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2790625", "genome_size_ungapped": "2790151", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004363315.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2731", "protein_coding_gene_count": "2645", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-22", "dateModified": "2019-03-22", "datePublished": "2019-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Tepidicella xavieri" ], "sample_taxid": [ "360241" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" 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"GCA_003417535.1", "taxid": 2294117, "species_taxid": 2294117, "relation_to_type": "type", "validated": true, "ani": 80.2921, "matched_fragments": 503, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 80.1699, "matched_fragments": 508, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=DSM 5680", "accession": "GCA_005938115.1", "taxid": 65786, "species_taxid": 65786, "relation_to_type": "type", "validated": true, "ani": 80.1498, "matched_fragments": 488, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=S1", "accession": "GCA_000723405.1", "taxid": 65786, "species_taxid": 65786, 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