{ "type": "genome", "identifier": "GCF_004364315.1", "organism": "Chromohalobacter marismortui", "title": "Chromohalobacter marismortui", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004364315.1", "bioproject": "PRJNA224116", "biosample": "SAMN08776302", "wgs_master": "SOBR00000000.1", "refseq_category": "reference genome", "taxid": "42055", "species_taxid": "42055", "organism_name": "Chromohalobacter marismortui", "infraspecific_name": "strain=DSM 6770", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/22", "asm_name": "ASM436431v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004364315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/364/315/GCF_004364315.1_ASM436431v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3553220", "genome_size_ungapped": "3552923", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004364315.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "3316", "protein_coding_gene_count": "3238", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-22", "dateModified": "2019-03-22", "datePublished": "2019-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Chromohalobacter marismortui" ], "sample_taxid": [ "42055" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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"total_fragments": 1171, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chromohalobacter beijerinckii", "strain": "strain=DSM 7218", "accession": "GCA_023061185.1", "taxid": 86179, "species_taxid": 86179, "relation_to_type": "type", "validated": true, "ani": 87.837, "matched_fragments": 919, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter moromii", "strain": "strain=TMW 2.2308", "accession": "GCA_023091865.1", "taxid": 2860329, "species_taxid": 2860329, "relation_to_type": "type", "validated": true, "ani": 87.8265, "matched_fragments": 952, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter japonicus", "strain": "strain=CECT 7219", "accession": "GCA_023061175.1", "taxid": 223900, "species_taxid": 223900, "relation_to_type": "type", "validated": true, "ani": 87.7651, "matched_fragments": 905, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter canadensis", "strain": "strain=DSM 6769", "accession": "GCA_023061155.1", "taxid": 141389, "species_taxid": 141389, "relation_to_type": "suspected-type", "validated": true, "ani": 87.4917, "matched_fragments": 924, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter salexigens", "strain": "strain=DSM 3043", "accession": "GCA_000055785.1", "taxid": 158080, "species_taxid": 158080, "relation_to_type": "type", "validated": true, "ani": 87.0067, "matched_fragments": 974, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter sarecensis", "strain": "strain=DSM 15547", "accession": "GCA_023061135.1", "taxid": 245294, "species_taxid": 245294, "relation_to_type": "type", "validated": true, "ani": 86.3356, "matched_fragments": 931, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter nigrandesensis", "strain": "strain=DSM 14323", "accession": "GCA_023061285.1", "taxid": 119863, "species_taxid": 119863, "relation_to_type": "type", "validated": true, "ani": 86.2504, "matched_fragments": 938, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004364315.1", "gtdb_species": "s__Chromohalobacter marismortui", "ani": 100.0, "matched_fragments": 1171, "total_fragments": 1171, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Chromohalobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013393405.1", "gtdb_species": "s__Chromohalobacter salexigens_A", "ani": 87.7606, "matched_fragments": 912, "total_fragments": 1171, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Chromohalobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000821045.2", "gtdb_species": "s__Chromohalobacter japonicus", "ani": 87.6536, "matched_fragments": 916, "total_fragments": 1171, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Chromohalobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.33", "min_intra_species_ani": "95.33", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900221025.1", "gtdb_species": "s__Chromohalobacter canadensis", "ani": 87.4405, "matched_fragments": 950, "total_fragments": 1171, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Chromohalobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000761475.1", "gtdb_species": "s__Chromohalobacter israelensis", "ani": 86.7271, "matched_fragments": 924, "total_fragments": 1171, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Chromohalobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.76", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.176, "doubling_h": 0.761, "growth_tmp": 32.5, "optimum_tmp": 32.5, "optimum_ph": 7.416, "genome_size": 3553220.0, "gc_content": 63.9, "coding_genes": 3271.0, "rRNA16S_genes": 5.0, "tRNA_genes": 69.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chromohalobacter", "marismortui" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }