{ "type": "genome", "identifier": "GCF_004365175.1", "organism": "Kribbella voronezhensis", "title": "Kribbella voronezhensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004365175.1", "bioproject": "PRJNA224116", "biosample": "SAMN10872472", "wgs_master": "SOCE00000000.1", "refseq_category": "reference genome", "taxid": "2512212", "species_taxid": "2512212", "organism_name": "Kribbella voronezhensis", "infraspecific_name": "strain=VKM Ac-2575", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/22", "asm_name": "ASM436517v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004365175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/365/175/GCF_004365175.1_ASM436517v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8032448", "genome_size_ungapped": "8031968", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004365175.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "7480", "protein_coding_gene_count": "7378", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-22", "dateModified": "2019-03-22", "datePublished": "2019-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Kribbella voronezhensis" ], "sample_taxid": [ "2512212" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.176 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8032448", "Number of Sequences": "4", "Longest Sequences (bp)": "5888201", "N50 (bp)": "5888201", "Gap Ratio (%)": "0.005976", "GCcontent (%)": "68.2", "Number of CDSs": "7522", "Average Protein Length": "326.4", "Coding Ratio (%)": "91.7", "Number of rRNAs": "2", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kribbella monticola", "strain": "strain=NEAU-SW521", "accession": "GCA_003261635.1", "taxid": 2185285, "species_taxid": 2185285, "relation_to_type": "type", "validated": true, "ani": 93.3235, "matched_fragments": 2375, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella catacumbae", "strain": "strain=DSM 19601", "accession": "GCA_000372465.1", "taxid": 460086, "species_taxid": 460086, "relation_to_type": "type", "validated": true, "ani": 83.9155, "matched_fragments": 1749, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella flavida", "strain": "strain=DSM 17836", "accession": "GCA_000024345.1", "taxid": 182640, "species_taxid": 182640, "relation_to_type": "type", "validated": true, "ani": 83.6286, "matched_fragments": 1611, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella italica", "strain": "strain=DSM 28967", "accession": "GCA_014205135.1", "taxid": 1540520, "species_taxid": 1540520, "relation_to_type": "type", "validated": true, "ani": 83.4583, "matched_fragments": 1694, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella amoyensis", "strain": "strain=DSM 24683", "accession": "GCA_007828865.1", "taxid": 996641, "species_taxid": 996641, "relation_to_type": "type", "validated": true, "ani": 83.1029, "matched_fragments": 1646, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 82.907, "matched_fragments": 1434, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 82.7641, "matched_fragments": 1602, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 82.5568, "matched_fragments": 1570, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella shirazensis", "strain": "strain=DSM 45490", "accession": "GCA_011761605.1", "taxid": 1105143, "species_taxid": 1105143, "relation_to_type": "type", "validated": true, "ani": 82.4399, "matched_fragments": 1538, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jejuensis", "strain": "strain=DSM 17305", "accession": "GCA_006715085.1", "taxid": 236068, "species_taxid": 236068, "relation_to_type": "type", "validated": true, "ani": 82.3279, "matched_fragments": 1513, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 82.28, "matched_fragments": 1604, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sindirgiensis", "strain": "strain=DSM 27082", "accession": "GCA_004331435.1", "taxid": 1124744, "species_taxid": 1124744, "relation_to_type": "type", "validated": true, "ani": 82.2335, "matched_fragments": 1597, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella aluminosa", "strain": "strain=DSM 18824", "accession": "GCA_017876295.1", "taxid": 416017, "species_taxid": 416017, "relation_to_type": "type", "validated": true, "ani": 82.2294, "matched_fragments": 1535, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella antibiotica", "strain": "strain=JCM 13523", "accession": "GCA_004349055.1", "taxid": 190195, "species_taxid": 190195, "relation_to_type": "type", "validated": true, "ani": 81.7734, "matched_fragments": 1432, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.9206, "matched_fragments": 530, "total_fragments": 2675, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004365175.1", "gtdb_species": "s__Kribbella sp004365175", "ani": 100.0, "matched_fragments": 2675, "total_fragments": 2675, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003261635.1", "gtdb_species": "s__Kribbella monticola", "ani": 93.3296, "matched_fragments": 2374, "total_fragments": 2675, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014217565.1", "gtdb_species": "s__Kribbella qitaiheensis", "ani": 87.7434, "matched_fragments": 2050, "total_fragments": 2675, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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}, { "accession": "GCF_000024345.1", "gtdb_species": "s__Kribbella flavida", "ani": 83.6105, "matched_fragments": 1614, "total_fragments": 2675, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001984195.1", "gtdb_species": "s__Kribbella sp001984195", "ani": 83.5863, "matched_fragments": 1669, "total_fragments": 2675, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014205135.1", 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83.1015, "matched_fragments": 1646, "total_fragments": 2675, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004365875.1", "gtdb_species": "s__Kribbella sp004365875", "ani": 82.3574, "matched_fragments": 1592, "total_fragments": 2675, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004217145.1", "gtdb_species": "s__Kribbella soli_A", "ani": 82.192, "matched_fragments": 1603, "total_fragments": 2675, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 28.295, "optimum_tmp": 29.25, "optimum_ph": 7.093, "genome_size": 8603649.2, "gc_content": 69.05, "coding_genes": 6915.0, "rRNA16S_genes": 2.0, "tRNA_genes": 51.0, "gram_stain": 1.0, "sporulation": 0.9, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.9, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.1, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kribbella", "voronezhensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }