{
    "type": "genome",
    "identifier": "GCF_004366555.1",
    "organism": "Mycolicibacterium litorale",
    "title": "Mycolicibacterium litorale",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004366555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05421873",
        "wgs_master": "SOQY00000000.1",
        "refseq_category": "na",
        "taxid": "758802",
        "species_taxid": "758802",
        "organism_name": "Mycolicibacterium litorale",
        "infraspecific_name": "strain=CGMCC 4.5724",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/22",
        "asm_name": "ASM436655v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_004366555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/366/555/GCF_004366555.1_ASM436655v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5549188",
        "genome_size_ungapped": "5547638",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-17",
        "total_gene_count": "5392",
        "protein_coding_gene_count": "5276",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-22",
    "dateModified": "2019-03-22",
    "datePublished": "2019-03-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycolicibacterium litorale"
        ],
        "sample_taxid": [
            "758802"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.501 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5549188",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "2126661",
        "N50 (bp)": "1180129",
        "Gap Ratio (%)": "0.027932",
        "GCcontent (%)": "68.9",
        "Number of CDSs": "5349",
        "Average Protein Length": "321.7",
        "Coding Ratio (%)": "93.0",
        "Number of rRNAs": "5",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mycolicibacterium litorale",
                "strain": "strain=CGMCC 4.5724",
                "accession": "GCA_004366555.1",
                "taxid": 758802,
                "species_taxid": 758802,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1839,
                "total_fragments": 1841,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mycolicibacterium litorale",
                "strain": "strain=JCM 17423",
                "accession": "GCA_010731695.1",
                "taxid": 758802,
                "species_taxid": 758802,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9968,
                "matched_fragments": 1841,
                "total_fragments": 1841,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mycolicibacterium baixiangningiae",
                "strain": "strain=LJ126",
                "accession": "GCA_014893035.1",
                "taxid": 2761578,
                "species_taxid": 2761578,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4475,
                "matched_fragments": 1494,
                "total_fragments": 1841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium baixiangningiae",
                "strain": "strain=LJ126",
                "accession": "GCA_016313185.1",
                "taxid": 2761578,
                "species_taxid": 2761578,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4243,
                "matched_fragments": 1496,
                "total_fragments": 1841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium monacense",
                "strain": "strain=DSM 44395",
                "accession": "GCA_009931355.1",
                "taxid": 85693,
                "species_taxid": 85693,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.781,
                "matched_fragments": 1475,
                "total_fragments": 1841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium monacense",
                "strain": "strain=DSM 44395",
                "accession": "GCA_002086655.1",
                "taxid": 85693,
                "species_taxid": 85693,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7697,
                "matched_fragments": 1450,
                "total_fragments": 1841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium monacense",
                "strain": "strain=JCM 15658",
                "accession": "GCA_010731575.1",
                "taxid": 85693,
                "species_taxid": 85693,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7264,
                "matched_fragments": 1472,
                "total_fragments": 1841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum",
                "strain": "strain=JCM 6387",
                "accession": "GCA_022179545.1",
                "taxid": 144549,
                "species_taxid": 1766,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2139,
                "matched_fragments": 974,
                "total_fragments": 1841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium crocinum",
                "strain": "strain=JCM 16369",
                "accession": "GCA_022370635.3",
                "taxid": 388459,
                "species_taxid": 388459,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8859,
                "matched_fragments": 891,
                "total_fragments": 1841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium vinylchloridicum",
                "strain": "strain=CECT 8761",
                "accession": "GCA_013404075.1",
                "taxid": 2736928,
                "species_taxid": 2736928,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8235,
                "matched_fragments": 899,
                "total_fragments": 1841,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_010731695.1",
                "gtdb_species": "s__Mycobacterium litorale",
                "ani": 99.9968,
                "matched_fragments": 1841,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014218295.1",
                "gtdb_species": "s__Mycobacterium litorale_B",
                "ani": 88.1293,
                "matched_fragments": 1550,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016313185.1",
                "gtdb_species": "s__Mycobacterium sp016313185",
                "ani": 87.4156,
                "matched_fragments": 1497,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.68",
                "min_intra_species_ani": "97.36",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001499995.1",
                "gtdb_species": "s__Mycobacterium sp001499995",
                "ani": 86.9364,
                "matched_fragments": 1411,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001500125.1",
                "gtdb_species": "s__Mycobacterium sp001500125",
                "ani": 86.8197,
                "matched_fragments": 1446,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010731575.1",
                "gtdb_species": "s__Mycobacterium monacense",
                "ani": 86.7265,
                "matched_fragments": 1472,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "98.82",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_004570325.1",
                "gtdb_species": "s__Mycobacterium sp004570325",
                "ani": 84.252,
                "matched_fragments": 1348,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017352375.1",
                "gtdb_species": "s__Mycobacterium sp017352375",
                "ani": 82.7871,
                "matched_fragments": 1275,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000612725.1",
                "gtdb_species": "s__Mycobacterium austroafricanum",
                "ani": 81.3983,
                "matched_fragments": 1096,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002086815.1",
                "gtdb_species": "s__Mycobacterium parafortuitum",
                "ani": 81.1404,
                "matched_fragments": 1100,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900603025.1",
                "gtdb_species": "s__Mycobacterium hassiacum",
                "ani": 80.7823,
                "matched_fragments": 1009,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001494595.1",
                "gtdb_species": "s__Mycobacterium sp001494595",
                "ani": 80.344,
                "matched_fragments": 923,
                "total_fragments": 1841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Mycolicibacterium",
        "litorale"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}