{ "type": "genome", "identifier": "GCF_004366795.1", "organism": "Alicyclobacillus sacchari", "title": "Alicyclobacillus sacchari", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004366795.1", "bioproject": "PRJNA224116", "biosample": "SAMN08770184", "wgs_master": "SORF00000000.1", "refseq_category": "reference genome", "taxid": "392010", "species_taxid": "392010", "organism_name": "Alicyclobacillus sacchari", "infraspecific_name": "strain=DSM 17974", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/22", "asm_name": "ASM436679v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004366795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/366/795/GCF_004366795.1_ASM436679v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2946319", "genome_size_ungapped": "2946034", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004366795.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "2910", "protein_coding_gene_count": "2789", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-22", "dateModified": "2019-03-22", "datePublished": "2019-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Alicyclobacillus sacchari" ], "sample_taxid": [ "392010" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001552675.1", "gtdb_species": "s__Alicyclobacillus sendaiensis", "ani": 77.191, "matched_fragments": 102, "total_fragments": 951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Alicyclobacillales;f__Alicyclobacillaceae;g__Alicyclobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.602, "doubling_h": -0.128, "growth_tmp": 50.0, "optimum_tmp": 47.5, "optimum_ph": 4.25, "genome_size": 2946319.0, "gc_content": 56.964, "coding_genes": 3028.8, "rRNA16S_genes": 6.0, "tRNA_genes": 63.667, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, 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