{
    "type": "genome",
    "identifier": "GCF_004369205.1",
    "organism": "Pelotomaculum schinkii",
    "title": "Pelotomaculum schinkii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Advanced Industrial Science and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004369205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09009608",
        "wgs_master": "QFGA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "78350",
        "species_taxid": "78350",
        "organism_name": "Pelotomaculum schinkii",
        "infraspecific_name": "strain=HH",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/25",
        "asm_name": "ASM436920v1",
        "asm_submitter": "National Institute of Advanced Industrial Science and Technology",
        "gbrs_paired_asm": "GCA_004369205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/369/205/GCF_004369205.1_ASM436920v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4436185",
        "genome_size_ungapped": "4436185",
        "gc_percent": "48.500000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004369205.1-RS_2024_05_13",
        "annotation_date": "2024-05-13",
        "total_gene_count": "4202",
        "protein_coding_gene_count": "4074",
        "non_coding_gene_count": "68",
        "pubmed_id": "30126076"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-25",
    "dateModified": "2019-03-25",
    "datePublished": "2019-03-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pelotomaculum schinkii"
        ],
        "sample_taxid": [
            "78350"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands: Wageningen"
        ],
        "sample_host_location_id": [],
        "data_size": "1.260 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4436185",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "2352337",
        "N50 (bp)": "2352337",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.4",
        "Number of CDSs": "4148",
        "Average Protein Length": "294.6",
        "Coding Ratio (%)": "82.6",
        "Number of rRNAs": "11",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pelotomaculum schinkii",
                "strain": "strain=HH",
                "accession": "GCA_004369205.1",
                "taxid": 78350,
                "species_taxid": 78350,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1475,
                "total_fragments": 1475,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004369205.1",
                "gtdb_species": "s__Pelotomaculum_C schinkii",
                "ani": 100.0,
                "matched_fragments": 1474,
                "total_fragments": 1475,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Pelotomaculaceae;g__Pelotomaculum_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.26",
                "min_intra_species_ani": "97.26",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002408725.1",
                "gtdb_species": "s__DTU098 sp002408725",
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                "matched_fragments": 138,
                "total_fragments": 1475,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Pelotomaculaceae;g__DTU098",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002365855.1",
                "gtdb_species": "s__UBA3103 sp002365855",
                "ani": 77.4827,
                "matched_fragments": 91,
                "total_fragments": 1475,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Pelotomaculaceae;g__UBA3103",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001512635.1",
                "gtdb_species": "s__DTU098 sp001512635",
                "ani": 77.4488,
                "matched_fragments": 130,
                "total_fragments": 1475,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Pelotomaculaceae;g__DTU098",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.71",
                "min_intra_species_ani": "99.66",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002365865.1",
                "gtdb_species": "s__UBA3102 sp002365865",
                "ani": 77.4071,
                "matched_fragments": 60,
                "total_fragments": 1475,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Pelotomaculaceae;g__UBA3102",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000010565.1",
                "gtdb_species": "s__Pelotomaculum thermopropionicum",
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                "total_fragments": 1475,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Pelotomaculaceae;g__Pelotomaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002067515.1",
                "gtdb_species": "s__MVQK01 sp002067515",
                "ani": 77.0698,
                "matched_fragments": 66,
                "total_fragments": 1475,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Pelotomaculaceae;g__MVQK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002305915.1",
                "gtdb_species": "s__DTU098 sp002305915",
                "ani": 77.068,
                "matched_fragments": 119,
                "total_fragments": 1475,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Pelotomaculaceae;g__DTU098",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.352,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.2,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pelotomaculum",
        "schinkii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}