{ "type": "genome", "identifier": "GCF_004376175.1", "organism": "Halalkalibacterium halodurans", "title": "Halalkalibacterium halodurans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fujian Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004376175.1", "bioproject": "PRJNA224116", "biosample": "SAMN11125370", "wgs_master": "SNUY00000000.1", "refseq_category": "na", "taxid": "86665", "species_taxid": "86665", "organism_name": "Halalkalibacterium halodurans", "infraspecific_name": "strain=DSM 497", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/25", "asm_name": "ASM437617v1", "asm_submitter": "Fujian Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_004376175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/376/175/GCF_004376175.1_ASM437617v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4191775", "genome_size_ungapped": "4191185", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "181", "contig_count": "181", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004376175.1-RS_2024_03_30", "annotation_date": "2024-03-30", "total_gene_count": "4214", "protein_coding_gene_count": "3971", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-25", "dateModified": "2019-03-25", "datePublished": "2019-03-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Halalkalibacterium halodurans" ], "sample_taxid": [ "86665" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.203 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4191775", "Number of Sequences": "181", "Longest Sequences (bp)": "155566", "N50 (bp)": "47825", "Gap Ratio (%)": "0.014075", "GCcontent (%)": "43.2", "Number of CDSs": "4105", "Average Protein Length": "284.9", "Coding Ratio (%)": "83.7", "Number of rRNAs": "11", "Number of tRNAs": "74", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halalkalibacterium halodurans", "strain": "strain=DSM 497", "accession": "GCA_004376175.1", "taxid": 86665, "species_taxid": 86665, 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"anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Halalkalibacterium", "halodurans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }