{ "type": "genome", "identifier": "GCF_004402785.1", "organism": "Cryobacterium algoritolerans", "title": "Cryobacterium algoritolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004402785.1", "bioproject": "PRJNA224116", "biosample": "SAMN11157805", "wgs_master": "SOFP00000000.1", "refseq_category": "reference genome", "taxid": "1259184", "species_taxid": "1259184", "organism_name": "Cryobacterium algoritolerans", "infraspecific_name": "strain=MDT1-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/26", "asm_name": "ASM440278v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_004402785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/402/785/GCF_004402785.1_ASM440278v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3715409", "genome_size_ungapped": "3715409", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "87", "contig_count": "87", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004402785.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "3536", "protein_coding_gene_count": "3396", "non_coding_gene_count": "55", "pubmed_id": "32090405" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-26", "dateModified": "2019-03-26", "datePublished": "2019-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Cryobacterium algoritolerans" ], "sample_taxid": [ "1259184" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.028 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3715409", "Number of Sequences": "87", "Longest Sequences (bp)": "314400", "N50 (bp)": "94066", "Gap Ratio (%)": "0.000538", "GCcontent (%)": "67.0", "Number of CDSs": "3484", "Average Protein Length": "311.6", "Coding Ratio (%)": "87.7", "Number of rRNAs": "1", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cryobacterium breve", "strain": "strain=TMT4-23", "accession": "GCA_004402375.1", "taxid": 1259258, "species_taxid": 1259258, 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"status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 78.3274, "matched_fragments": 396, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces humatus", "strain": "strain=JCM 14319", "accession": "GCA_021228295.1", "taxid": 279573, "species_taxid": 279573, "relation_to_type": "type", "validated": true, "ani": 78.1877, "matched_fragments": 365, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 78.0164, "matched_fragments": 381, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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