{ "type": "genome", "identifier": "GCF_004402975.1", "organism": "Paraburkholderia dipogonis", "title": "Paraburkholderia dipogonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Murdoch University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004402975.1", "bioproject": "PRJNA224116", "biosample": "SAMN11159184", "wgs_master": "SNVI00000000.1", "refseq_category": "na", "taxid": "1211383", "species_taxid": "1211383", "organism_name": "Paraburkholderia dipogonis", "infraspecific_name": "strain=ICMP 19430", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/26", "asm_name": "ASM440297v1", "asm_submitter": "Murdoch University", "gbrs_paired_asm": "GCA_004402975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/402/975/GCF_004402975.1_ASM440297v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10263517", "genome_size_ungapped": "10263517", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004402975.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "9283", "protein_coding_gene_count": "8849", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-26", "dateModified": "2019-03-26", "datePublished": "2019-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia dipogonis" ], "sample_taxid": [ "1211383" ], "sample_host_organism": [ "Dipogon lignosus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand" ], "sample_host_location_id": [], "data_size": "2.852 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10263517", "Number of Sequences": "8", "Longest Sequences (bp)": "4414879", "N50 (bp)": "3862781", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.6", "Number of CDSs": "9281", "Average Protein Length": "309.7", "Coding Ratio (%)": "84.0", "Number of rRNAs": "12", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia dipogonis", "strain": "strain=ICMP 19430", "accession": "GCA_004402975.1", "taxid": 1211383, "species_taxid": 1211383, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3400, "total_fragments": 3418, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Paraburkholderia phytofirmans", "strain": "strain=PsJN", "accession": "GCA_000020125.1", "taxid": 261302, "species_taxid": 261302, "relation_to_type": "type", "validated": true, "ani": 95.8251, "matched_fragments": 2256, "total_fragments": 3418, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Paraburkholderia aromaticivorans", "strain": "strain=BN5", "accession": "GCA_002278075.1", "taxid": 2026199, "species_taxid": 2026199, "relation_to_type": "type", "validated": true, "ani": 89.4268, "matched_fragments": 1916, "total_fragments": 3418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia xenovorans", "strain": "strain=LB400", "accession": "GCA_000756045.1", "taxid": 36873, "species_taxid": 36873, "relation_to_type": "type", "validated": true, "ani": 89.2475, "matched_fragments": 1880, "total_fragments": 3418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia xenovorans", "strain": "strain=LB400", "accession": "GCA_000013645.1", "taxid": 36873, "species_taxid": 36873, "relation_to_type": "type", "validated": true, "ani": 89.2473, "matched_fragments": 1875, "total_fragments": 3418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ultramafica", "strain": "strain=LMG 28614", "accession": "GCA_902859915.1", "taxid": 1544867, "species_taxid": 1544867, "relation_to_type": "type", "validated": true, "ani": 87.6112, "matched_fragments": 1601, "total_fragments": 3418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 86.7308, "matched_fragments": 1865, "total_fragments": 3418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia fynbosensis", "strain": "strain=LMG 27177", "accession": "GCA_902859935.1", "taxid": 1200993, "species_taxid": 1200993, "relation_to_type": "type", "validated": true, "ani": 86.6478, "matched_fragments": 1672, "total_fragments": 3418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia elongata", "strain": "strain=5N", "accession": "GCA_013177735.1", "taxid": 2675747, "species_taxid": 2675747, "relation_to_type": "type", "validated": true, "ani": 86.6284, "matched_fragments": 1726, "total_fragments": 3418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia haematera", "strain": "strain=LMG 31837", "accession": "GCA_905220975.1", "taxid": 2793077, "species_taxid": 2793077, "relation_to_type": "type", "validated": true, "ani": 86.611, "matched_fragments": 1717, "total_fragments": 3418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 86.5793, "matched_fragments": 1798, "total_fragments": 3418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia fungorum", "strain": "strain=ATCC BAA-463", "accession": "GCA_000961515.1", "taxid": 134537, "species_taxid": 134537, "relation_to_type": "suspected-type", "validated": true, "ani": 86.1228, "matched_fragments": 1817, "total_fragments": 3418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia kirstenboschensis", "strain": "strain=KB15", "accession": "GCA_001636975.1", "taxid": 1245436, "species_taxid": 1245436, "relation_to_type": "type", "validated": true, "ani": 84.7981, "matched_fragments": 1374, "total_fragments": 3418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", 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