{ "type": "genome", "identifier": "GCF_004403945.1", "organism": "Cryobacterium lactosi", "title": "Cryobacterium lactosi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004403945.1", "bioproject": "PRJNA224116", "biosample": "SAMN11157756", "wgs_master": "SOHM00000000.1", "refseq_category": "reference genome", "taxid": "1259202", "species_taxid": "1259202", "organism_name": "Cryobacterium lactosi", "infraspecific_name": "strain=Sr59", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/26", "asm_name": "ASM440394v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_004403945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/403/945/GCF_004403945.1_ASM440394v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4657575", "genome_size_ungapped": "4657575", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004403945.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "4381", "protein_coding_gene_count": "4271", "non_coding_gene_count": "62", "pubmed_id": "32090405" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-26", "dateModified": "2019-03-26", "datePublished": "2019-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Cryobacterium lactosi" ], "sample_taxid": [ "1259202" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.279 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4657575", "Number of Sequences": "53", "Longest Sequences (bp)": "530025", "N50 (bp)": "172848", "Gap Ratio (%)": "0.000365", "GCcontent (%)": "67.6", "Number of CDSs": "4370", "Average Protein Length": "319.4", "Coding Ratio (%)": "89.9", "Number of rRNAs": "4", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cryobacterium zongtaii", "strain": "strain=TMN-42", "accession": "GCA_002909375.1", "taxid": 1259217, "species_taxid": 1259217, 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81.4102, "matched_fragments": 547, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium psychrotolerans", "strain": "strain=CGMCC 1.5382", "accession": "GCA_004564325.1", "taxid": 386301, "species_taxid": 386301, "relation_to_type": "type", "validated": true, "ani": 81.332, "matched_fragments": 548, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium breve", "strain": "strain=TMT4-23", "accession": "GCA_004402375.1", "taxid": 1259258, "species_taxid": 1259258, "relation_to_type": "type", "validated": true, "ani": 80.8003, "matched_fragments": 598, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium melibiosiphilum", "strain": "strain=Hh39", "accession": "GCA_003602235.1", "taxid": 995039, "species_taxid": 995039, "relation_to_type": "type", "validated": true, "ani": 80.6099, "matched_fragments": 637, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium tepidiphilum", "strain": "strain=NEAU-85", "accession": "GCA_003716325.1", "taxid": 2486026, "species_taxid": 2486026, "relation_to_type": "type", "validated": true, "ani": 80.2346, "matched_fragments": 483, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium levicorallinum", "strain": "strain=GMCC 1.11211", "accession": "GCA_900113585.1", "taxid": 995038, "species_taxid": 995038, "relation_to_type": "type", "validated": true, "ani": 80.1653, "matched_fragments": 505, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microterricola viridarii", "strain": "strain=DSM 21772", "accession": "GCA_900104895.1", "taxid": 412690, "species_taxid": 412690, "relation_to_type": "type", "validated": true, "ani": 79.9899, "matched_fragments": 518, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microterricola pindariensis", "strain": "strain=PON 10", "accession": "GCA_002936985.1", "taxid": 478010, "species_taxid": 478010, "relation_to_type": "type", "validated": true, "ani": 79.8552, "matched_fragments": 493, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces flavus", "strain": "strain=CPCC 202695", "accession": "GCA_004366335.2", "taxid": 589382, "species_taxid": 589382, "relation_to_type": "type", "validated": true, "ani": 78.5075, "matched_fragments": 412, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_021922985.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 78.2949, "matched_fragments": 417, "total_fragments": 1530, "ani_threshold": 95, "status": 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