{ "type": "genome", "identifier": "GCF_004405125.1", "organism": "Jeotgalibacillus salarius", "title": "Jeotgalibacillus salarius", "description": "na", "data type": "Genome sequencing and assembly", "organization": "institute of microbiology,chinese academy of sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004405125.1", "bioproject": "PRJNA224116", "biosample": "SAMN11163993", "wgs_master": "SORX00000000.1", "refseq_category": "reference genome", "taxid": "546023", "species_taxid": "546023", "organism_name": "Jeotgalibacillus salarius", "infraspecific_name": "strain=ASL-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/26", "asm_name": "ASM440512v1", "asm_submitter": "institute of microbiology,chinese academy of sciences", "gbrs_paired_asm": "GCA_004405125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/405/125/GCF_004405125.1_ASM440512v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3424270", "genome_size_ungapped": "3423770", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004405125.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "3450", "protein_coding_gene_count": "3401", "non_coding_gene_count": "37", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-26", "dateModified": "2019-03-26", "datePublished": "2019-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Jeotgalibacillus salarius" ], "sample_taxid": [ "546023" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.973 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3424270", "Number of Sequences": "34", "Longest Sequences (bp)": "552741", "N50 (bp)": "402112", "Gap Ratio (%)": "0.014602", "GCcontent (%)": "41.6", "Number of CDSs": "3469", "Average Protein Length": "285.0", "Coding Ratio (%)": "86.6", "Number of rRNAs": "1", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Jeotgalibacillus salarius", "strain": "strain=ASL-1", "accession": "GCA_004405125.1", "taxid": 546023, "species_taxid": 546023, 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1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus endolithicus", "strain": "strain=KCTC 33579", "accession": "GCA_023078335.1", "taxid": 1535204, "species_taxid": 1535204, "relation_to_type": "type", "validated": true, "ani": 75.8413, "matched_fragments": 55, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004405125.1", "gtdb_species": "s__Jeotgalibacillus salarius", "ani": 100.0, "matched_fragments": 1128, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Jeotgalibacillaceae;g__Jeotgalibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": 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76.3718, "matched_fragments": 62, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_B;g__Rossellomorea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000294775.2", "gtdb_species": "s__Cytobacillus oceanisediminis_B", "ani": 76.2915, "matched_fragments": 53, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.26", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_007830235.1", "gtdb_species": "s__Cytobacillus oceanisediminis", "ani": 76.2334, "matched_fragments": 56, "total_fragments": 1129, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Jeotgalibacillus", "salarius" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }