{
    "type": "genome",
    "identifier": "GCF_004514425.2",
    "organism": "Shinella sumterensis",
    "title": "Shinella sumterensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Georgia",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004514425.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06458377",
        "wgs_master": "MYFN00000000.2",
        "refseq_category": "na",
        "taxid": "1967501",
        "species_taxid": "1967501",
        "organism_name": "Shinella sumterensis",
        "infraspecific_name": "strain=MEC087",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/12/01",
        "asm_name": "ASM451442v2",
        "asm_submitter": "University of Georgia",
        "gbrs_paired_asm": "GCA_004514425.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/514/425/GCF_004514425.2_ASM451442v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5373392",
        "genome_size_ungapped": "5373392",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "57",
        "contig_count": "57",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-01",
        "total_gene_count": "5374",
        "protein_coding_gene_count": "5229",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-12-01",
    "dateModified": "2021-12-01",
    "datePublished": "2021-12-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shinella sumterensis"
        ],
        "sample_taxid": [
            "1967501"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Nantahala National Forest, NC"
        ],
        "sample_host_location_id": [],
        "data_size": "1.488 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5373392",
        "Number of Sequences": "57",
        "Longest Sequences (bp)": "808514",
        "N50 (bp)": "259640",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.4",
        "Number of CDSs": "5296",
        "Average Protein Length": "301.7",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Shinella sumterensis",
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                "accession": "GCA_004514425.2",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Shinella oryzae",
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                "accession": "GCA_023038235.1",
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                "species_taxid": 2871820,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1501,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
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                "status": "below_threshold"
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            {
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                "validated": true,
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                "matched_fragments": 1013,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella fusca",
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                "taxid": 544480,
                "species_taxid": 544480,
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                "validated": true,
                "ani": 86.0393,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella yambaruensis",
                "strain": "strain=DSM 18801",
                "accession": "GCA_022899355.1",
                "taxid": 415996,
                "species_taxid": 415996,
                "relation_to_type": "type",
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                "ani": 85.9949,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella granuli",
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                "accession": "GCA_004341885.1",
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                "species_taxid": 323621,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella curvata",
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                "species_taxid": 1817964,
                "relation_to_type": "type",
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                "ani": 85.5807,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella kummerowiae",
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                "accession": "GCA_009827055.1",
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                "species_taxid": 417745,
                "relation_to_type": "type",
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                "ani": 85.2352,
                "matched_fragments": 1169,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_004514435.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Shinella",
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            {
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                "ani_circumscription_radius": 95.0,
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            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
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            {
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    },
    "_bac2feature": {
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        "cell_length": 0.278,
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    "_genome_taxon": [
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        "sumterensis"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}