{ "type": "genome", "identifier": "GCF_004514475.2", "organism": "Paenibacillus athensensis", "title": "Paenibacillus athensensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Georgia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004514475.2", "bioproject": "PRJNA224116", "biosample": "SAMN06458379", "wgs_master": "MYFO00000000.2", "refseq_category": "reference genome", "taxid": "1967502", "species_taxid": "1967502", "organism_name": "Paenibacillus athensensis", "infraspecific_name": "strain=MEC069", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/01", "asm_name": "ASM451447v2", "asm_submitter": "University of Georgia", "gbrs_paired_asm": "GCA_004514475.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/514/475/GCF_004514475.2_ASM451447v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5639291", "genome_size_ungapped": "5639291", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004514475.2-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5062", "protein_coding_gene_count": "4867", "non_coding_gene_count": "136", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-01", "dateModified": "2021-12-01", "datePublished": "2021-12-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus athensensis" ], "sample_taxid": [ "1967502" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Nantahala National Forest, NC" ], "sample_host_location_id": [], "data_size": "1.585 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5639291", "Number of Sequences": "63", "Longest Sequences (bp)": "883907", "N50 (bp)": "387268", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.7", "Number of CDSs": "4954", "Average Protein Length": "329.5", "Coding Ratio (%)": "86.8", "Number of rRNAs": "10", "Number of tRNAs": "79", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus athensensis", "strain": "strain=MEC069", "accession": "GCA_004514475.2", "taxid": 1967502, "species_taxid": 1967502, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1858, 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"below_threshold" }, { "organism_name": "Paenibacillus tyrfis", "strain": "strain=MSt1", "accession": "GCA_000722545.1", "taxid": 1501230, "species_taxid": 1501230, "relation_to_type": "type", "validated": true, "ani": 77.3918, "matched_fragments": 244, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ferrarius", "strain": "strain=CY1", "accession": "GCA_002027705.1", "taxid": 1469647, "species_taxid": 1469647, "relation_to_type": "type", "validated": true, "ani": 77.3895, "matched_fragments": 230, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus germinis", "strain": "strain=LMG 31460", "accession": "GCA_013141785.1", "taxid": 2654979, "species_taxid": 2654979, "relation_to_type": "type", "validated": true, "ani": 77.3473, "matched_fragments": 222, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus 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"accession": "GCA_000380965.1", "taxid": 431596, "species_taxid": 431596, "relation_to_type": "type", "validated": true, "ani": 77.2147, "matched_fragments": 260, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus flagellatus", "strain": "strain=DXL2", "accession": "GCA_003217775.1", "taxid": 2211139, "species_taxid": 2211139, "relation_to_type": "type", "validated": true, "ani": 77.2102, "matched_fragments": 276, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus piri", "strain": "strain=MS74", "accession": "GCA_004354045.1", "taxid": 2547395, "species_taxid": 2547395, "relation_to_type": "type", "validated": true, "ani": 77.1956, "matched_fragments": 261, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ginsengarvi", "strain": "strain=KCTC 13059", "accession": "GCA_003626695.1", "taxid": 400777, 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76.7238, "matched_fragments": 303, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus donghaensis", "strain": "strain=KCTC 13049", "accession": "GCA_002192415.1", "taxid": 414771, "species_taxid": 414771, "relation_to_type": "type", "validated": true, "ani": 76.7188, "matched_fragments": 95, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 76.6456, "matched_fragments": 176, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus mendelii", "strain": "strain=C/2", "accession": "GCA_024498075.1", "taxid": 206163, "species_taxid": 206163, "relation_to_type": "type", "validated": true, "ani": 76.5777, "matched_fragments": 111, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus alkaliterrae", "strain": "strain=DSM 17040", "accession": "GCA_021532375.1", "taxid": 320909, "species_taxid": 320909, "relation_to_type": "type", "validated": true, "ani": 76.5481, "matched_fragments": 97, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus lactis", "strain": "strain=DSM 15596", "accession": "GCA_017873605.1", "taxid": 228574, "species_taxid": 228574, "relation_to_type": "type", "validated": true, "ani": 76.4872, "matched_fragments": 124, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus lautus", "strain": "strain=NBRC 15380", "accession": "GCA_004000945.1", "taxid": 1401, "species_taxid": 1401, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1072, "matched_fragments": 81, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" } 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