{ "type": "genome", "identifier": "GCF_004519315.1", "organism": "Mucilaginibacter psychrotolerans", "title": "Mucilaginibacter psychrotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong university at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004519315.1", "bioproject": "PRJNA224116", "biosample": "SAMN11152657", "wgs_master": "SOZE00000000.1", "refseq_category": "reference genome", "taxid": "1524096", "species_taxid": "1524096", "organism_name": "Mucilaginibacter psychrotolerans", "infraspecific_name": "strain=NH7-4", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/27", "asm_name": "ASM451931v1", "asm_submitter": "Shandong university at Weihai", "gbrs_paired_asm": "GCA_004519315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/519/315/GCF_004519315.1_ASM451931v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6422970", "genome_size_ungapped": "6422680", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "109", "contig_count": "109", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004519315.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5731", "protein_coding_gene_count": "5653", "non_coding_gene_count": "54", "pubmed_id": "27902239" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-27", "dateModified": "2019-03-27", "datePublished": "2019-03-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter psychrotolerans" ], "sample_taxid": [ "1524096" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.832 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6422970", "Number of Sequences": "109", "Longest Sequences (bp)": "442019", "N50 (bp)": "163771", "Gap Ratio (%)": "0.004515", "GCcontent (%)": "45.4", "Number of CDSs": "5569", "Average Protein Length": "330.0", "Coding Ratio (%)": "85.8", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter psychrotolerans", "strain": "strain=NH7-4", "accession": "GCA_004519315.1", "taxid": 1524096, "species_taxid": 1524096, 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79.8897, "matched_fragments": 924, "total_fragments": 2091, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 78.886, "matched_fragments": 581, "total_fragments": 2091, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=CCM 8625", "accession": "GCA_014635525.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 78.5616, "matched_fragments": 536, "total_fragments": 2091, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=DSM 100995", "accession": "GCA_014196695.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 78.5586, "matched_fragments": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 77.8509, "matched_fragments": 378, "total_fragments": 2091, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrenus", "strain": "strain=ZH6", "accession": "GCA_003432065.1", "taxid": 2482727, "species_taxid": 2482727, "relation_to_type": "type", "validated": true, "ani": 77.7376, "matched_fragments": 414, "total_fragments": 2091, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 77.6385, "matched_fragments": 346, "total_fragments": 2091, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter inviolabilis", "strain": "strain=HC2", "accession": "GCA_011089895.1", "taxid": 2714892, "species_taxid": 2714892, "relation_to_type": "type", "validated": true, "ani": 77.4812, "matched_fragments": 355, "total_fragments": 2091, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 77.1737, "matched_fragments": 238, "total_fragments": 2091, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004519315.1", "gtdb_species": "s__Mucilaginibacter psychrotolerans", "ani": 100.0, "matched_fragments": 2083, "total_fragments": 2091, "gtdb_taxonomy": 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