{ "type": "genome", "identifier": "GCF_004521915.1", "organism": "Brevibacillus migulae", "title": "Brevibacillus migulae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xinxiang Medical University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004521915.1", "bioproject": "PRJNA224116", "biosample": "SAMN10511178", "wgs_master": "SDKD00000000.1", "refseq_category": "reference genome", "taxid": "1644114", "species_taxid": "1644114", "organism_name": "Brevibacillus migulae", "infraspecific_name": "strain=CFH S0501", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/29", "asm_name": "ASM452191v1", "asm_submitter": "Xinxiang Medical University", "gbrs_paired_asm": "GCA_004521915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/521/915/GCF_004521915.1_ASM452191v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5261149", "genome_size_ungapped": "5261149", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "96", "contig_count": "96", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004521915.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5250", "protein_coding_gene_count": "5081", "non_coding_gene_count": "120", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-29", "dateModified": "2019-03-29", "datePublished": "2019-03-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacillus migulae" ], "sample_taxid": [ "1644114" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Henan" ], "sample_host_location_id": [], "data_size": "1.504 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5261149", "Number of Sequences": "96", "Longest Sequences (bp)": "433289", "N50 (bp)": "200026", "Gap Ratio (%)": "0.000475", "GCcontent (%)": "49.7", "Number of CDSs": "5177", "Average Protein Length": "296.3", "Coding Ratio (%)": "87.5", "Number of rRNAs": "0", "Number of tRNAs": "105", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacillus migulae", "strain": "strain=CFH S0501", "accession": "GCA_004521915.1", "taxid": 1644114, "species_taxid": 1644114, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1715, "total_fragments": 1718, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevibacillus choshinensis", "strain": "strain=DSM 8552", "accession": "GCA_001420695.1", "taxid": 54911, "species_taxid": 54911, "relation_to_type": "type", "validated": true, "ani": 77.5989, "matched_fragments": 194, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus nitrificans", "strain": "strain=JCM 15774", "accession": "GCA_003710965.1", "taxid": 651560, "species_taxid": 651560, "relation_to_type": "type", "validated": true, "ani": 77.4509, "matched_fragments": 232, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus centrosporus", "strain": "strain=NRRL NRS 664", "accession": "GCA_003710815.1", "taxid": 54910, "species_taxid": 54910, "relation_to_type": "type", "validated": true, "ani": 77.4146, "matched_fragments": 213, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus agri", "strain": "strain=NRRL NRS 1219", "accession": "GCA_003710885.1", "taxid": 51101, "species_taxid": 51101, "relation_to_type": "type", "validated": true, "ani": 77.3331, "matched_fragments": 214, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus centrosporus", "strain": "strain=NBRC 15540", "accession": "GCA_006540045.1", "taxid": 54910, "species_taxid": 54910, "relation_to_type": "type", "validated": true, "ani": 77.3089, "matched_fragments": 211, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus reuszeri", "strain": "strain=DSM 9887", "accession": "GCA_001187725.1", "taxid": 54915, "species_taxid": 54915, "relation_to_type": "type", "validated": true, "ani": 77.2924, "matched_fragments": 189, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus agri", "strain": "strain=DSM 6348", "accession": "GCA_004117055.1", "taxid": 51101, "species_taxid": 51101, "relation_to_type": "type", "validated": true, "ani": 77.2851, "matched_fragments": 215, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus gelatini", "strain": "strain=DSM 100115", "accession": "GCA_003710935.1", "taxid": 1655277, "species_taxid": 1655277, "relation_to_type": "type", "validated": true, "ani": 77.2727, "matched_fragments": 204, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus borstelensis", "strain": "strain=NRRL NRS 818", "accession": "GCA_003710865.1", "taxid": 45462, "species_taxid": 45462, "relation_to_type": "type", "validated": true, "ani": 77.2245, "matched_fragments": 202, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus parabrevis", "strain": "strain=NRRL NRS 605", "accession": "GCA_003710905.1", "taxid": 54914, "species_taxid": 54914, "relation_to_type": "type", "validated": true, "ani": 77.1712, "matched_fragments": 222, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus agri", "strain": "strain=NBRC 15538", "accession": "GCA_006540025.1", "taxid": 51101, "species_taxid": 51101, "relation_to_type": "type", "validated": true, "ani": 77.1687, "matched_fragments": 210, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus composti", "strain": "strain=FJAT-54423", "accession": "GCA_016406105.1", "taxid": 2796470, "species_taxid": 2796470, "relation_to_type": "type", "validated": true, "ani": 77.1315, "matched_fragments": 202, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus borstelensis", "strain": "strain=NBRC 15714", "accession": "GCA_006540165.1", "taxid": 45462, "species_taxid": 45462, "relation_to_type": "type", "validated": true, "ani": 77.0517, "matched_fragments": 201, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus parabrevis", "strain": "strain=NBRC 12334", "accession": "GCA_006539065.1", "taxid": 54914, "species_taxid": 54914, "relation_to_type": "type", "validated": true, "ani": 77.0452, "matched_fragments": 220, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus massiliensis", "strain": "strain=phR", "accession": "GCA_000311785.1", "taxid": 1118054, "species_taxid": 1118054, "relation_to_type": "type", "validated": true, "ani": 76.6856, "matched_fragments": 146, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004521915.1", "gtdb_species": "s__CFH-S0501 sp004521915", "ani": 100.0, "matched_fragments": 1715, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__CFH-S0501", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_011059135.1", "gtdb_species": "s__CFH-S0501 sp011059135", "ani": 77.8133, "matched_fragments": 296, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__CFH-S0501", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016811915.1", "gtdb_species": "s__Brevibacillus choshinensis_A", "ani": 77.7286, "matched_fragments": 244, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001420695.1", "gtdb_species": "s__Brevibacillus choshinensis", "ani": 77.6395, "matched_fragments": 195, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000503775.1", "gtdb_species": "s__Brevibacillus panacihumi_A", "ani": 77.5522, "matched_fragments": 204, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003013395.1", "gtdb_species": "s__Brevibacillus fortis", "ani": 77.5286, "matched_fragments": 169, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003710815.1", "gtdb_species": "s__Brevibacillus centrosporus", "ani": 77.4228, "matched_fragments": 210, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "95.98", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002897295.1", "gtdb_species": "s__Brevibacillus reuszeri_A", "ani": 77.3438, "matched_fragments": 172, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.18", "min_intra_species_ani": "96.18", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004117055.1", "gtdb_species": "s__Brevibacillus agri", "ani": 77.2984, "matched_fragments": 214, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.18", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001187725.1", "gtdb_species": "s__Brevibacillus reuszeri", "ani": 77.2932, "matched_fragments": 190, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003710935.1", "gtdb_species": "s__Brevibacillus gelatini", "ani": 77.2596, "matched_fragments": 203, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003710865.1", "gtdb_species": "s__Brevibacillus borstelensis", "ani": 77.229, "matched_fragments": 199, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.53", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_003710905.1", "gtdb_species": "s__Brevibacillus parabrevis", "ani": 77.1837, "matched_fragments": 221, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_018228725.1", "gtdb_species": "s__Brevibacillus sp018228725", "ani": 77.0869, "matched_fragments": 202, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000311785.1", "gtdb_species": "s__Brevibacillus_C massiliensis", "ani": 76.6869, "matched_fragments": 146, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.295, "cell_length": 0.38, "doubling_h": 0.285, "growth_tmp": 34.715, "optimum_tmp": 39.136, "optimum_ph": 6.585, "genome_size": 5734012.398, "gc_content": 49.472, "coding_genes": 5306.866, "rRNA16S_genes": 14.666, "tRNA_genes": 121.916, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.052, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.947, "mesophilic_range_tmp": 0.857, "thermophilic_range_tmp": 0.142, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brevibacillus", "migulae" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }