{ "type": "genome", "identifier": "GCF_004564075.1", "organism": "Microbacterium sediminis", "title": "Microbacterium sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004564075.1", "bioproject": "PRJNA224116", "biosample": "SAMN11180679", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "904291", "species_taxid": "904291", "organism_name": "Microbacterium sediminis", "infraspecific_name": "strain=YLB-01", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/02", "asm_name": "ASM456407v1", "asm_submitter": "The Third Institute of State Oceanic Administration", "gbrs_paired_asm": "GCA_004564075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/564/075/GCF_004564075.1_ASM456407v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2919864", "genome_size_ungapped": "2919864", "gc_percent": "71.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004564075.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "2829", "protein_coding_gene_count": "2758", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-02", "dateModified": "2019-04-02", "datePublished": "2019-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbacterium sediminis" ], "sample_taxid": [ "904291" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "0.769 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2919864", "Number of Sequences": "2", "Longest Sequences (bp)": "2792195", "N50 (bp)": "2792195", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.6", "Number of CDSs": "2812", "Average Protein Length": "319.1", "Coding Ratio (%)": "92.2", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbacterium sediminis", "strain": "strain=YLB-01", "accession": "GCA_004564075.1", "taxid": 904291, "species_taxid": 904291, 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