{ "type": "genome", "identifier": "GCF_004564235.1", "organism": "Cohnella luojiensis", "title": "Cohnella luojiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Center for Medicine & Biology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004564235.1", "bioproject": "PRJNA224116", "biosample": "SAMN11164850", "wgs_master": "SOMN00000000.1", "refseq_category": "reference genome", "taxid": "652876", "species_taxid": "652876", "organism_name": "Cohnella luojiensis", "infraspecific_name": "strain=CCTCC AB 208254", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/26", "asm_name": "ASM456423v1", "asm_submitter": "Research Center for Medicine & Biology", "gbrs_paired_asm": "GCA_004564235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/564/235/GCF_004564235.1_ASM456423v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5049922", "genome_size_ungapped": "5049922", "gc_percent": "50.000000", "replicon_count": "0", "scaffold_count": "115", "contig_count": "115", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004564235.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4834", "protein_coding_gene_count": "4688", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-26", "dateModified": "2019-03-26", "datePublished": "2019-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella luojiensis" ], "sample_taxid": [ "652876" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xinjiang" ], "sample_host_location_id": [], "data_size": "1.443 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5049922", "Number of Sequences": "115", "Longest Sequences (bp)": "423594", "N50 (bp)": "108402", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.9", "Number of CDSs": "4809", "Average Protein Length": "305.0", "Coding Ratio (%)": "87.1", "Number of rRNAs": "2", "Number of tRNAs": "57", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella luojiensis", "strain": "strain=CCTCC AB 208254", "accession": "GCA_004564235.1", "taxid": 652876, "species_taxid": 652876, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1631, "total_fragments": 1635, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cohnella lupini", "strain": "strain=CECT 8236", "accession": "GCA_003386205.1", "taxid": 1294267, "species_taxid": 1294267, "relation_to_type": "type", "validated": true, "ani": 80.9463, "matched_fragments": 791, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella herbarum", "strain": "strain=MFER-1", "accession": "GCA_012849095.1", "taxid": 2728023, "species_taxid": 2728023, "relation_to_type": "type", "validated": true, "ani": 80.0876, "matched_fragments": 659, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella cholangitidis", "strain": "strain=1605-214", "accession": "GCA_014107495.1", "taxid": 2598458, "species_taxid": 2598458, "relation_to_type": "type", "validated": true, "ani": 80.0159, "matched_fragments": 626, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella endophytica", "strain": "strain=M2MS4P-1", "accession": "GCA_003628305.1", "taxid": 2419778, "species_taxid": 2419778, "relation_to_type": "type", "validated": true, "ani": 79.7702, "matched_fragments": 567, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella abietis", "strain": "strain=HS21", "accession": "GCA_004295585.1", "taxid": 2507935, "species_taxid": 2507935, "relation_to_type": "type", "validated": true, "ani": 79.2218, "matched_fragments": 432, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella terricola", "strain": "strain=G13", "accession": "GCA_007786475.1", "taxid": 1289167, "species_taxid": 1289167, "relation_to_type": "type", "validated": true, "ani": 79.0817, "matched_fragments": 419, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lubricantis", "strain": 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"GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 76.2849, "matched_fragments": 76, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004564235.1", "gtdb_species": "s__Cohnella luojiensis", "ani": 100.0, "matched_fragments": 1631, "total_fragments": 1635, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003386205.1", "gtdb_species": "s__Cohnella lupini", "ani": 80.9409, "matched_fragments": 791, "total_fragments": 1635, "gtdb_taxonomy": 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014212015.1", "gtdb_species": "s__Cohnella lubricantis", "ani": 77.0535, "matched_fragments": 173, "total_fragments": 1635, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.347, "cell_length": 0.249, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 4660270.0, "gc_content": 55.152, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.5, "thermophilic_range_tmp": 0.5, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cohnella", "luojiensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }