{ "type": "genome", "identifier": "GCF_004564275.1", "organism": "Sphingomonas parva", "title": "Sphingomonas parva", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004564275.1", "bioproject": "PRJNA224116", "biosample": "SAMN11157850", "wgs_master": "SPDV00000000.1", "refseq_category": "reference genome", "taxid": "2555898", "species_taxid": "2555898", "organism_name": "Sphingomonas parva", "infraspecific_name": "strain=17J27-24", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/02", "asm_name": "ASM456427v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_004564275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/564/275/GCF_004564275.1_ASM456427v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4487171", "genome_size_ungapped": "4487171", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004564275.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "4287", "protein_coding_gene_count": "4186", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-02", "dateModified": "2019-04-02", "datePublished": "2019-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas parva" ], "sample_taxid": [ "2555898" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.218 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4487171", "Number of Sequences": "111", "Longest Sequences (bp)": "265521", "N50 (bp)": "95237", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.4", "Number of CDSs": "4176", "Average Protein Length": "310.5", "Coding Ratio (%)": "86.7", "Number of rRNAs": "4", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas parva", "strain": "strain=17J27-24", "accession": "GCA_004564275.1", "taxid": 2555898, "species_taxid": 2555898, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1439, "total_fragments": 1443, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingomonas deserti", "strain": "strain=GL-C-18", "accession": "GCA_003012735.1", "taxid": 2116704, "species_taxid": 2116704, "relation_to_type": "type", "validated": true, "ani": 82.1918, "matched_fragments": 855, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella humi", "strain": "strain=QZX222", "accession": "GCA_003129465.1", "taxid": 2068657, "species_taxid": 2068657, "relation_to_type": "type", "validated": true, "ani": 79.9196, "matched_fragments": 517, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella ginsenosidimutans", "strain": "strain=BS-11", "accession": "GCA_007995055.1", "taxid": 1176539, "species_taxid": 1176539, "relation_to_type": "type", "validated": true, "ani": 79.7044, "matched_fragments": 510, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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