{ "type": "genome", "identifier": "GCF_004571135.1", "organism": "Algoriphagus kandeliae", "title": "Algoriphagus kandeliae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shenzhen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004571135.1", "bioproject": "PRJNA224116", "biosample": "SAMN11269075", "wgs_master": "SPSB00000000.1", "refseq_category": "reference genome", "taxid": "2562278", "species_taxid": "2562278", "organism_name": "Algoriphagus kandeliae", "infraspecific_name": "strain=XY-J91", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/02", "asm_name": "ASM457113v1", "asm_submitter": "Shenzhen University", "gbrs_paired_asm": "GCA_004571135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/571/135/GCF_004571135.1_ASM457113v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3928637", "genome_size_ungapped": "3928637", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004571135.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3425", "protein_coding_gene_count": "3364", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-02", "dateModified": "2019-04-02", "datePublished": "2019-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Algoriphagus kandeliae" ], "sample_taxid": [ "2562278" ], "sample_host_organism": [ "Kandelia candel" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hong Kong" ], "sample_host_location_id": [], "data_size": "1.109 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3928637", "Number of Sequences": "15", "Longest Sequences (bp)": "1051218", "N50 (bp)": "933067", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.4", "Number of CDSs": "3334", "Average Protein Length": "355.4", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus kandeliae", "strain": "strain=XY-J91", "accession": "GCA_004571135.1", "taxid": 2562278, "species_taxid": 2562278, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1302, "total_fragments": 1303, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Algoriphagus marincola", "strain": "strain=DSM 16067", "accession": "GCA_000429405.1", "taxid": 264027, "species_taxid": 264027, "relation_to_type": "type", "validated": true, "ani": 78.6707, "matched_fragments": 461, "total_fragments": 1303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus formosus", "strain": "strain=XAY3209", "accession": "GCA_002807035.1", "taxid": 2007308, "species_taxid": 2007308, "relation_to_type": "type", "validated": true, "ani": 78.49, "matched_fragments": 453, "total_fragments": 1303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus aquimaris", "strain": "strain=F21", "accession": "GCA_004358035.1", "taxid": 2547398, "species_taxid": 2547398, "relation_to_type": "type", "validated": true, "ani": 78.4579, "matched_fragments": 459, "total_fragments": 1303, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=DSM 19315", "accession": "GCA_900113375.1", "taxid": 435880, "species_taxid": 435880, "relation_to_type": "type", "validated": true, "ani": 77.7308, "matched_fragments": 312, "total_fragments": 1303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=CGMCC 1.11027", "accession": "GCA_004366575.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 77.6806, "matched_fragments": 303, "total_fragments": 1303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=DSM 25035", "accession": "GCA_900148515.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 77.6803, "matched_fragments": 306, "total_fragments": 1303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus mannitolivorans", "strain": "strain=DSM 15301", 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