{ "type": "genome", "identifier": "GCF_004614185.1", "organism": "Massilia arenosa", "title": "Massilia arenosa", "description": "na", "data type": "Genome sequencing and assembly", "organization": "South Dakota State University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004614185.1", "bioproject": "PRJNA224116", "biosample": "SAMN11263498", "wgs_master": "SPVF00000000.1", "refseq_category": "reference genome", "taxid": "2561931", "species_taxid": "2561931", "organism_name": "Massilia arenosa", "infraspecific_name": "strain=MC02", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/03", "asm_name": "ASM461418v1", "asm_submitter": "South Dakota State University", "gbrs_paired_asm": "GCA_004614185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/614/185/GCF_004614185.1_ASM461418v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5023356", "genome_size_ungapped": "5023356", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "275", "contig_count": "275", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004614185.1-RS_2024_08_18", "annotation_date": "2024-08-18", "total_gene_count": "4747", "protein_coding_gene_count": "4589", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-03", "dateModified": "2019-04-03", "datePublished": "2019-04-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Massilia arenosa" ], "sample_taxid": [ "2561931" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.388 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5023356", "Number of Sequences": "275", "Longest Sequences (bp)": "119695", "N50 (bp)": "28267", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.2", "Number of CDSs": "4357", "Average Protein Length": "328.8", "Coding Ratio (%)": "85.6", "Number of rRNAs": "1", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia arenosa", "strain": "strain=MC02", "accession": "GCA_004614185.1", "taxid": 2561931, "species_taxid": 2561931, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1522, "total_fragments": 1534, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Massilia terrae", "strain": "strain=JCM 31606", "accession": "GCA_024753145.1", "taxid": 1811224, "species_taxid": 1811224, "relation_to_type": "type", "validated": true, "ani": 81.4964, "matched_fragments": 845, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agilis", "strain": "strain=JCM 31605", "accession": "GCA_024756255.1", "taxid": 1811226, "species_taxid": 1811226, "relation_to_type": "type", "validated": true, "ani": 81.4663, "matched_fragments": 849, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia solisilvae", "strain": "strain=JCM 31607", "accession": "GCA_024753215.1", "taxid": 1811225, "species_taxid": 1811225, "relation_to_type": "type", "validated": true, "ani": 81.3993, "matched_fragments": 853, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 81.3943, "matched_fragments": 716, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia niastensis", "strain": "strain=DSM 21313", "accession": "GCA_000382345.1", "taxid": 544911, "species_taxid": 544911, "relation_to_type": "type", "validated": true, "ani": 81.2179, "matched_fragments": 863, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella namucuonensis", "strain": "strain=CGMCC 1.11014", "accession": "GCA_900116645.1", "taxid": 1035707, "species_taxid": 1035707, "relation_to_type": "type", "validated": true, "ani": 81.1808, "matched_fragments": 863, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agri", "strain": "strain=JCM 31661", "accession": "GCA_024753255.1", "taxid": 1886785, "species_taxid": 1886785, "relation_to_type": "type", "validated": true, "ani": 81.1533, "matched_fragments": 860, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia polaris", "strain": "strain=RP-1-19", "accession": "GCA_012927275.1", "taxid": 2728846, "species_taxid": 2728846, "relation_to_type": "type", "validated": true, "ani": 80.9802, "matched_fragments": 735, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia horti", "strain": "strain=ONC3", "accession": "GCA_004614195.1", "taxid": 2562153, "species_taxid": 2562153, "relation_to_type": "type", "validated": true, "ani": 80.9396, "matched_fragments": 744, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas brunnea", "strain": "strain=LX20W", "accession": "GCA_014042345.1", "taxid": 2758569, "species_taxid": 2758569, "relation_to_type": "type", 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"total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella violacea", "strain": "strain=CECT 8897", "accession": "GCA_014191875.1", "taxid": 1715466, "species_taxid": 1715466, "relation_to_type": "type", "validated": true, "ani": 80.4065, "matched_fragments": 752, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia pinisoli", "strain": "strain=JCM 31316", "accession": "GCA_024753285.1", "taxid": 1772194, "species_taxid": 1772194, "relation_to_type": "type", "validated": true, "ani": 80.1469, "matched_fragments": 814, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004614185.1", "gtdb_species": "s__Massilia arenosa", "ani": 100.0, "matched_fragments": 1522, "total_fragments": 1534, "gtdb_taxonomy": 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