{ "type": "genome", "identifier": "GCF_004614195.1", "organism": "Massilia horti", "title": "Massilia horti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "South Dakota State Univeristy", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004614195.1", "bioproject": "PRJNA224116", "biosample": "SAMN11265771", "wgs_master": "SPUM00000000.1", "refseq_category": "reference genome", "taxid": "2562153", "species_taxid": "2562153", "organism_name": "Massilia horti", "infraspecific_name": "strain=ONC3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/03", "asm_name": "ASM461419v1", "asm_submitter": "South Dakota State Univeristy", "gbrs_paired_asm": "GCA_004614195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/614/195/GCF_004614195.1_ASM461419v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5620653", "genome_size_ungapped": "5620653", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "154", "contig_count": "154", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004614195.1-RS_2024_08_18", "annotation_date": "2024-08-18", "total_gene_count": "4976", "protein_coding_gene_count": "4854", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-03", "dateModified": "2019-04-03", "datePublished": "2019-04-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Massilia horti" ], "sample_taxid": [ "2562153" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.567 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5620653", "Number of Sequences": "154", "Longest Sequences (bp)": "207795", "N50 (bp)": "56531", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "4824", "Average Protein Length": "338.8", "Coding Ratio (%)": "87.2", "Number of rRNAs": "1", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia horti", "strain": "strain=ONC3", "accession": "GCA_004614195.1", "taxid": 2562153, "species_taxid": 2562153, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1758, "total_fragments": 1802, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Massilia solisilvae", "strain": "strain=JCM 31607", "accession": "GCA_024753215.1", "taxid": 1811225, "species_taxid": 1811225, "relation_to_type": "type", "validated": true, "ani": 83.4778, "matched_fragments": 1052, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agilis", "strain": "strain=JCM 31605", "accession": "GCA_024756255.1", "taxid": 1811226, "species_taxid": 1811226, "relation_to_type": "type", "validated": true, "ani": 83.4082, "matched_fragments": 1086, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia terrae", "strain": "strain=JCM 31606", "accession": "GCA_024753145.1", "taxid": 1811224, "species_taxid": 1811224, "relation_to_type": "type", "validated": true, "ani": 83.1193, "matched_fragments": 1036, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia niastensis", "strain": "strain=DSM 21313", "accession": "GCA_000382345.1", "taxid": 544911, "species_taxid": 544911, "relation_to_type": "type", "validated": true, "ani": 82.9898, "matched_fragments": 974, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia norwichensis", "strain": "strain=LMG 28164", "accession": "GCA_024753245.1", "taxid": 1442366, "species_taxid": 1442366, "relation_to_type": "type", "validated": true, "ani": 82.5789, "matched_fragments": 979, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia alkalitolerans", "strain": "strain=DSM 17462", "accession": "GCA_000427785.1", "taxid": 286638, "species_taxid": 286638, "relation_to_type": "type", "validated": true, "ani": 82.4302, "matched_fragments": 983, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia forsythiae", "strain": "strain=GN2-R2", "accession": "GCA_012849555.1", "taxid": 2728020, "species_taxid": 2728020, "relation_to_type": "type", "validated": true, "ani": 82.2872, "matched_fragments": 1037, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agri", "strain": "strain=JCM 31661", "accession": "GCA_024753255.1", "taxid": 1886785, "species_taxid": 1886785, "relation_to_type": "type", "validated": true, "ani": 82.1243, "matched_fragments": 922, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia yuzhufengensis", "strain": "strain=CGMCC 1.12041", "accession": "GCA_900112225.1", "taxid": 1164594, "species_taxid": 1164594, "relation_to_type": "type", "validated": true, "ani": 82.093, "matched_fragments": 971, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia timonae", "strain": "strain=CCUG 45783", "accession": "GCA_000315425.1", "taxid": 47229, "species_taxid": 47229, "relation_to_type": "type", "validated": true, "ani": 82.019, "matched_fragments": 947, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia aromaticivorans", "strain": "strain=ML15P13", "accession": "GCA_013003915.1", "taxid": 2725995, "species_taxid": 2725995, "relation_to_type": "type", "validated": true, "ani": 81.9117, "matched_fragments": 925, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia oculi", "strain": "strain=CCUG 43427", "accession": "GCA_003143515.1", "taxid": 945844, "species_taxid": 945844, "relation_to_type": "type", "validated": true, "ani": 81.887, "matched_fragments": 945, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 81.6296, 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003520365.1", "gtdb_species": "s__Massilia sp003520365", "ani": 83.0613, "matched_fragments": 630, "total_fragments": 1802, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000382345.1", "gtdb_species": "s__Massilia niastensis", "ani": 82.9784, "matched_fragments": 975, "total_fragments": 1802, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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