{ "type": "genome", "identifier": "GCF_004634185.1", "organism": "Flavobacterium arcticum", "title": "Flavobacterium arcticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004634185.1", "bioproject": "PRJNA224116", "biosample": "SAMN11047111", "wgs_master": "SKBO00000000.1", "refseq_category": "na", "taxid": "1784713", "species_taxid": "1784713", "organism_name": "Flavobacterium arcticum", "infraspecific_name": "strain=KCTC 42668", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/04", "asm_name": "ASM463418v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_004634185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/634/185/GCF_004634185.1_ASM463418v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2945587", "genome_size_ungapped": "2945587", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004634185.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2685", "protein_coding_gene_count": "2633", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-04", "dateModified": "2019-04-04", "datePublished": "2019-04-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium arcticum" ], "sample_taxid": [ "1784713" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway" ], "sample_host_location_id": [], "data_size": "0.826 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2945587", "Number of Sequences": "12", "Longest Sequences (bp)": "619555", "N50 (bp)": "304542", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.9", "Number of CDSs": "2635", "Average Protein Length": "335.1", "Coding Ratio (%)": "89.9", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium arcticum", "strain": "strain=KCTC 42668", "accession": "GCA_004634185.1", "taxid": 1784713, "species_taxid": 1784713, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 976, "total_fragments": 976, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium arcticum", "strain": "strain=SM1502", "accession": "GCA_003344925.1", "taxid": 1784713, "species_taxid": 1784713, "relation_to_type": "type", "validated": true, "ani": 99.9997, "matched_fragments": 975, "total_fragments": 976, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium salilacus subsp. altitudinum", "strain": "strain=LaA7.5", "accession": "GCA_010078225.1", "taxid": 2691899, "species_taxid": 2898423, "relation_to_type": "type", "validated": true, "ani": 83.0316, "matched_fragments": 731, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium salilacus subsp. salilacus", "strain": "strain=SaA2.12", "accession": "GCA_004634195.1", "taxid": 2545633, "species_taxid": 2898423, "relation_to_type": "type", "validated": true, "ani": 82.9267, "matched_fragments": 736, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium litorale", "strain": "strain=WSW3-B6", "accession": "GCA_019613795.1", "taxid": 2856519, "species_taxid": 2856519, "relation_to_type": "type", "validated": true, "ani": 80.2248, "matched_fragments": 553, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium coralii", "strain": "strain=D11R37", "accession": "GCA_019891545.1", "taxid": 2838017, "species_taxid": 2838017, "relation_to_type": "type", "validated": true, "ani": 78.0109, "matched_fragments": 313, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alkalisoli", "strain": "strain=XS-5", "accession": "GCA_008000935.1", "taxid": 2602769, "species_taxid": 2602769, "relation_to_type": "type", "validated": true, "ani": 78.0009, "matched_fragments": 294, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium solisilvae", "strain": "strain=SE-s27", "accession": "GCA_012911605.1", "taxid": 1852019, "species_taxid": 1852019, "relation_to_type": "type", "validated": true, "ani": 76.5582, "matched_fragments": 98, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003344925.1", "gtdb_species": "s__Flavobacterium arcticum", "ani": 99.9997, "matched_fragments": 975, "total_fragments": 976, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_004634195.1", "gtdb_species": "s__Flavobacterium sp004634195", "ani": 82.9153, "matched_fragments": 737, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009848495.1", "gtdb_species": "s__Flavobacterium sp009848495", "ani": 77.8537, "matched_fragments": 254, "total_fragments": 976, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009741375.1", "gtdb_species": "s__Flavobacterium rakeshii", "ani": 77.7302, "matched_fragments": 307, "total_fragments": 976, "gtdb_taxonomy": 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"gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.049, "anaerobic_respiration": 0.019, "aerobic_respiration": 0.931, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "arcticum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }