{ "type": "genome", "identifier": "GCF_004681975.1", "organism": "Ramlibacter humi", "title": "Ramlibacter humi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004681975.1", "bioproject": "PRJNA224116", "biosample": "SAMN11031991", "wgs_master": "SMLK00000000.1", "refseq_category": "reference genome", "taxid": "2530451", "species_taxid": "2530451", "organism_name": "Ramlibacter humi", "infraspecific_name": "strain=18x22-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/05", "asm_name": "ASM468197v1", "asm_submitter": "Guangdong institute of Microbiology", "gbrs_paired_asm": "GCA_004681975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/681/975/GCF_004681975.1_ASM468197v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4468638", "genome_size_ungapped": "4468638", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004681975.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "4287", "protein_coding_gene_count": "4200", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-05", "dateModified": "2019-04-05", "datePublished": "2019-04-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Ramlibacter humi" ], "sample_taxid": [ "2530451" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hainan" ], 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"conclusive" }, { "organism_name": "Ramlibacter henchirensis", "strain": "strain=DSM 14656", "accession": "GCA_004682015.1", "taxid": 204072, "species_taxid": 204072, "relation_to_type": "type", "validated": true, "ani": 84.6839, "matched_fragments": 926, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter algicola", "strain": "strain=CrO1", "accession": "GCA_016641735.1", "taxid": 2795217, "species_taxid": 2795217, "relation_to_type": "type", "validated": true, "ani": 84.3932, "matched_fragments": 926, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 84.2873, "matched_fragments": 961, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter 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"GCA_004681965.1", "taxid": 1781167, "species_taxid": 1781167, "relation_to_type": "type", "validated": true, "ani": 82.2277, "matched_fragments": 770, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax soli", "strain": "strain=NBRC 106424", "accession": "GCA_001591385.1", "taxid": 376815, "species_taxid": 376815, "relation_to_type": "type", "validated": true, "ani": 81.3059, "matched_fragments": 754, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 81.1715, "matched_fragments": 696, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax soli", "strain": "strain=DSM 21634", "accession": "GCA_003337555.1", "taxid": 545864, "species_taxid": 545864, "relation_to_type": "type", "validated": true, "ani": 80.4314, "matched_fragments": 835, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus ampelinus", "strain": "strain=CFBP 1192", "accession": "GCA_024832295.1", "taxid": 54067, "species_taxid": 54067, "relation_to_type": "type", "validated": true, "ani": 80.3996, "matched_fragments": 587, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004681975.1", "gtdb_species": "s__Ramlibacter sp004681975", "ani": 100.0, "matched_fragments": 1477, "total_fragments": 1477, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ramlibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004682015.1", "gtdb_species": "s__Ramlibacter henchirensis", "ani": 84.7054, "matched_fragments": 924, "total_fragments": 1477, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ramlibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016641735.1", "gtdb_species": "s__Ramlibacter sp016641735", "ani": 84.3825, "matched_fragments": 928, "total_fragments": 1477, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ramlibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 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monticola", "ani": 82.5122, "matched_fragments": 891, "total_fragments": 1477, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ramlibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 29.333, "optimum_tmp": 30.0, "optimum_ph": 7.5, "genome_size": 4614330.857, "gc_content": 69.2, "coding_genes": 4012.5, "rRNA16S_genes": 1.333, "tRNA_genes": 44.333, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Ramlibacter", "humi" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }