{ "type": "genome", "identifier": "GCF_004682045.1", "organism": "Pseudomonas nabeulensis", "title": "Pseudomonas nabeulensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Balearic Islands", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004682045.1", "bioproject": "PRJNA224116", "biosample": "SAMN09781218", "wgs_master": "QUZT00000000.1", "refseq_category": "reference genome", "taxid": "2293833", "species_taxid": "2293833", "organism_name": "Pseudomonas nabeulensis", "infraspecific_name": "strain=E10B", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/05", "asm_name": "ASM468204v1", "asm_submitter": "University of Balearic Islands", "gbrs_paired_asm": "GCA_004682045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/682/045/GCF_004682045.1_ASM468204v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6763512", "genome_size_ungapped": "6763512", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "150", "contig_count": "150", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004682045.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "6179", "protein_coding_gene_count": "6040", "non_coding_gene_count": "61", "pubmed_id": "30910423" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-05", "dateModified": "2019-04-05", "datePublished": "2019-04-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas nabeulensis" ], "sample_taxid": [ "2293833" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tunisia: Kairouan, Sbikha" ], "sample_host_location_id": [], "data_size": "1.905 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6763512", "Number of Sequences": "150", "Longest Sequences (bp)": "294970", "N50 (bp)": "77761", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.3", "Number of CDSs": "6136", "Average Protein Length": "327.2", "Coding Ratio (%)": "89.1", "Number of rRNAs": "4", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas nabeulensis", "strain": "strain=E10B", "accession": "GCA_004682045.1", "taxid": 2293833, "species_taxid": 2293833, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2169, "total_fragments": 2177, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas cremoris", "strain": "strain=WS 5106", "accession": "GCA_014230465.1", "taxid": 2724178, "species_taxid": 2724178, "relation_to_type": "type", "validated": true, "ani": 89.9828, "matched_fragments": 1653, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kairouanensis", "strain": "strain=KC12", "accession": "GCA_004682055.1", "taxid": 2293832, "species_taxid": 2293832, "relation_to_type": "type", "validated": true, "ani": 89.8806, "matched_fragments": 1712, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pisciculturae", "strain": "strain=P115", "accession": "GCA_015461805.1", "taxid": 2730413, "species_taxid": 2730413, "relation_to_type": "type", "validated": true, "ani": 89.3336, "matched_fragments": 1630, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=LMG 21611", "accession": "GCA_001870415.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 89.0275, "matched_fragments": 1614, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=NBRC 12693", "accession": "GCA_002091515.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 88.9822, "matched_fragments": 1606, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "", "accession": "GCA_900624915.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 88.9239, "matched_fragments": 1641, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=LMG 21611", "accession": "GCA_900103345.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 88.9174, "matched_fragments": 1635, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "strain=LMG 19695", "accession": "GCA_001870465.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 88.8315, "matched_fragments": 1575, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "", "accession": "GCA_900625005.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 88.8109, "matched_fragments": 1584, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 88.7985, "matched_fragments": 1610, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "strain=CCUG 51517", "accession": "GCA_008801565.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 88.7568, "matched_fragments": 1586, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas canadensis", "strain": "strain=2-92", "accession": "GCA_000503215.1", "taxid": 915099, "species_taxid": 915099, "relation_to_type": "type", "validated": true, "ani": 88.7518, "matched_fragments": 1584, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 88.6568, "matched_fragments": 1579, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_001730615.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 88.5383, "matched_fragments": 1577, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 88.2734, "matched_fragments": 1611, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas salomonii", "strain": "strain=LMG 22120", "accession": "GCA_001730645.1", "taxid": 191391, "species_taxid": 191391, "relation_to_type": "type", "validated": true, "ani": 88.0469, "matched_fragments": 1532, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas salomonii", "strain": "strain=ICMP 14252", "accession": "GCA_900107155.1", "taxid": 191391, "species_taxid": 191391, "relation_to_type": "type", "validated": true, "ani": 88.0293, "matched_fragments": 1548, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tolaasii", "strain": "strain=CCUG 23369", "accession": "GCA_008801395.1", "taxid": 29442, "species_taxid": 29442, "relation_to_type": "type", "validated": true, "ani": 87.9678, "matched_fragments": 1544, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tolaasii", "strain": "", "accession": "GCA_900625075.1", "taxid": 29442, "species_taxid": 29442, "relation_to_type": "type", "validated": true, "ani": 87.9352, "matched_fragments": 1542, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas edaphica", "strain": "strain=RD25", "accession": "GCA_005863185.1", "taxid": 2006980, "species_taxid": 2006980, "relation_to_type": "type", "validated": true, "ani": 87.9093, "matched_fragments": 1189, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tolaasii", "strain": "strain=NCPPB 2192", "accession": "GCA_002813445.1", "taxid": 29442, "species_taxid": 29442, "relation_to_type": "type", "validated": true, "ani": 87.9013, "matched_fragments": 1552, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 85.904, "matched_fragments": 1399, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas karstica", "strain": "strain=CCM 7891", "accession": "GCA_009707515.1", "taxid": 1055468, "species_taxid": 1055468, "relation_to_type": "type", "validated": true, "ani": 85.1763, "matched_fragments": 1266, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004682045.1", "gtdb_species": "s__Pseudomonas_E nabeulensis", "ani": 100.0, "matched_fragments": 2169, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.61", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_014230465.1", "gtdb_species": "s__Pseudomonas_E cremoris", "ani": 89.9728, "matched_fragments": 1656, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.87", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004682055.1", "gtdb_species": "s__Pseudomonas_E kairouanensis", "ani": 89.8819, "matched_fragments": 1712, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000346755.1", "gtdb_species": "s__Pseudomonas_E sp000346755", "ani": 89.3524, "matched_fragments": 1527, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015461805.1", "gtdb_species": "s__Pseudomonas_E pisciculturae", "ani": 89.3321, "matched_fragments": 1631, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.09", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003852405.1", "gtdb_species": "s__Pseudomonas_E sp003852405", "ani": 89.2114, "matched_fragments": 1608, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.89", "min_intra_species_ani": "95.89", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014851685.1", "gtdb_species": "s__Pseudomonas_E sp014851685", "ani": 88.9562, "matched_fragments": 1532, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001579805.1", "gtdb_species": "s__Pseudomonas_E azotoformans_A", "ani": 88.9561, "matched_fragments": 1640, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.75", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900103345.1", "gtdb_species": "s__Pseudomonas_E azotoformans", "ani": 88.9276, "matched_fragments": 1634, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.97", "min_intra_species_ani": "95.87", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_000612585.1", "gtdb_species": "s__Pseudomonas_E sp000612585", "ani": 88.8897, "matched_fragments": 1541, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013385825.1", "gtdb_species": "s__Pseudomonas_E reactans", "ani": 88.8669, "matched_fragments": 1612, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.45", "min_intra_species_ani": "96.30", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001870465.1", "gtdb_species": "s__Pseudomonas_E extremorientalis", "ani": 88.839, "matched_fragments": 1574, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 29, "status": "-" }, { "accession": "GCF_002007785.1", "gtdb_species": "s__Pseudomonas_E azotoformans_B", "ani": 88.8097, "matched_fragments": 1622, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_013385985.1", "gtdb_species": "s__Pseudomonas_E sp013385985", "ani": 88.794, "matched_fragments": 1591, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013386585.1", "gtdb_species": "s__Pseudomonas_E sp013386585", "ani": 88.7529, "matched_fragments": 1570, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002979555.1", "gtdb_species": "s__Pseudomonas_E sp002979555", "ani": 88.6442, "matched_fragments": 1489, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_001186335.1", "gtdb_species": "s__Pseudomonas_E trivialis_B", "ani": 88.6062, "matched_fragments": 1591, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.34", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900105325.1", "gtdb_species": "s__Pseudomonas_E marginalis", "ani": 88.6003, "matched_fragments": 1623, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.53", "min_intra_species_ani": "96.47", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCF_003612935.1", "gtdb_species": "s__Pseudomonas_E sp003013355", "ani": 88.3731, "matched_fragments": 1655, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.56", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002563895.1", "gtdb_species": "s__Pseudomonas_E lurida", "ani": 88.256, "matched_fragments": 1613, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.19", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_900107155.1", "gtdb_species": "s__Pseudomonas_E salomonii", "ani": 88.0192, "matched_fragments": 1549, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "96.43", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_001983175.1", "gtdb_species": "s__Pseudomonas_E cedrina", "ani": 87.9865, "matched_fragments": 1533, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.10", "min_intra_species_ani": "97.30", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002813445.1", "gtdb_species": "s__Pseudomonas_E tolaasii", "ani": 87.8898, "matched_fragments": 1553, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.93", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_004519405.1", "gtdb_species": "s__Pseudomonas_E sp004519405", "ani": 87.3437, "matched_fragments": 1495, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.60", "min_intra_species_ani": "98.40", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_018614775.1", "gtdb_species": "s__Pseudomonas_E fluorescens_BY", "ani": 83.3144, "matched_fragments": 1048, "total_fragments": 2177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.248, "cell_length": 0.186, "doubling_h": -0.025, "growth_tmp": 28.767, "optimum_tmp": 27.972, "optimum_ph": 7.258, "genome_size": 5663774.24, "gc_content": 60.938, "coding_genes": 5204.79, "rRNA16S_genes": 5.319, "tRNA_genes": 67.35, "gram_stain": 0.0, "sporulation": 0.013, "motility": 0.975, "range_salinity": 0.666, "facultative_respiration": 0.021, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.978, "mesophilic_range_tmp": 0.926, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.073, "bacillus_cell_shape": 0.988, "coccus_cell_shape": 0.011, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudomonas", "nabeulensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }