{ "type": "genome", "identifier": "GCF_004682055.1", "organism": "Pseudomonas kairouanensis", "title": "Pseudomonas kairouanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Balearic Islands", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004682055.1", "bioproject": "PRJNA224116", "biosample": "SAMN09781217", "wgs_master": "QUZU00000000.1", "refseq_category": "reference genome", "taxid": "2293832", "species_taxid": "2293832", "organism_name": "Pseudomonas kairouanensis", "infraspecific_name": "strain=KC12", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/05", "asm_name": "ASM468205v1", "asm_submitter": "University of Balearic Islands", "gbrs_paired_asm": "GCA_004682055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/682/055/GCF_004682055.1_ASM468205v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6702324", "genome_size_ungapped": "6702324", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "107", "contig_count": "107", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004682055.1-RS_2024_03_22", "annotation_date": "2024-03-22", "total_gene_count": "6203", "protein_coding_gene_count": "6055", "non_coding_gene_count": "68", "pubmed_id": "30910423" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-05", "dateModified": "2019-04-05", "datePublished": "2019-04-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas kairouanensis" ], "sample_taxid": [ "2293832" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tunisia: Kairouan, Sbikha" ], "sample_host_location_id": [], "data_size": "1.885 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6702324", "Number of Sequences": "107", "Longest Sequences (bp)": "503235", "N50 (bp)": "112454", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.4", "Number of CDSs": "6092", "Average Protein Length": "325.8", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas kairouanensis", "strain": "strain=KC12", "accession": "GCA_004682055.1", "taxid": 2293832, "species_taxid": 2293832, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=LMG 21611", "accession": "GCA_900103345.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 88.7454, "matched_fragments": 1614, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=NBRC 12693", "accession": "GCA_002091515.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 88.7411, "matched_fragments": 1616, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "", "accession": "GCA_900625005.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 88.7063, "matched_fragments": 1585, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "", "accession": "GCA_900624915.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 88.6879, "matched_fragments": 1625, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "strain=LMG 19695", "accession": "GCA_001870465.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 88.6741, "matched_fragments": 1597, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 88.5632, "matched_fragments": 1640, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=ICMP 3553", "accession": "GCA_003700725.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 88.5225, "matched_fragments": 1521, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 88.5054, "matched_fragments": 1643, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=ICMP 3553", "accession": "GCA_001645105.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 88.4912, "matched_fragments": 1598, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_001730615.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 88.4209, "matched_fragments": 1587, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 88.2851, "matched_fragments": 1579, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=NBRC 14160", "accession": "GCA_002091595.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 87.6033, "matched_fragments": 1479, "total_fragments": 2178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=DSM 50090", "accession": "GCA_007858165.1", "taxid": 294, "species_taxid": 294, 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