{ "type": "genome", "identifier": "GCF_004684345.1", "organism": "Citrobacter tructae", "title": "Citrobacter tructae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004684345.1", "bioproject": "PRJNA224116", "biosample": "SAMN11282944", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2562449", "species_taxid": "2562449", "organism_name": "Citrobacter tructae", "infraspecific_name": "strain=SNU WT2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/07", "asm_name": "ASM468434v1", "asm_submitter": "Seoul National University", "gbrs_paired_asm": "GCA_004684345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/684/345/GCF_004684345.1_ASM468434v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4946572", "genome_size_ungapped": "4946572", "gc_percent": "52.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004684345.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4693", "protein_coding_gene_count": "4487", "non_coding_gene_count": "116", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-07", "dateModified": "2019-04-07", "datePublished": "2019-04-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Citrobacter tructae" ], "sample_taxid": [ "2562449" ], "sample_host_organism": [ "Rainbow trout" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Chungbuk province" ], "sample_host_location_id": [], "data_size": "1.405 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4946572", "Number of Sequences": "2", "Longest Sequences (bp)": "4840504", "N50 (bp)": "4840504", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.0", "Number of CDSs": "4531", "Average Protein Length": "320.9", "Coding Ratio (%)": "88.2", "Number of rRNAs": "25", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Citrobacter pasteurii", "strain": "strain=FDAARGOS 1424", "accession": "GCA_019047765.1", "taxid": 1563222, "species_taxid": 1563222, "relation_to_type": "type", "validated": true, "ani": 87.9813, "matched_fragments": 1305, 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"type", "validated": true, "ani": 81.5264, "matched_fragments": 861, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.5159, "matched_fragments": 853, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004684345.1", "gtdb_species": "s__Citrobacter tructae", "ani": 100.0, "matched_fragments": 1647, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": 0.0, "doubling_h": null, "growth_tmp": 33.115, "optimum_tmp": 34.75, "optimum_ph": null, "genome_size": 5074394.762, "gc_content": 52.718, "coding_genes": 4844.44, "rRNA16S_genes": 7.464, "tRNA_genes": 84.484, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.857, "range_salinity": 0.5, "facultative_respiration": 0.166, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.833, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Citrobacter", "tructae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }