{
    "type": "genome",
    "identifier": "GCF_004684935.1",
    "organism": "Sporolactobacillus shoreae",
    "title": "Sporolactobacillus shoreae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Center for Genetic Engineering and Biotechnology (BIOTEC)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004684935.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11298793",
        "wgs_master": "SRJD00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1465501",
        "species_taxid": "1465501",
        "organism_name": "Sporolactobacillus shoreae",
        "infraspecific_name": "strain=BK92",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/07",
        "asm_name": "ASM468493v1",
        "asm_submitter": "National Center for Genetic Engineering and Biotechnology (BIOTEC)",
        "gbrs_paired_asm": "GCA_004684935.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/684/935/GCF_004684935.1_ASM468493v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3654870",
        "genome_size_ungapped": "3654538",
        "gc_percent": "45.500000",
        "replicon_count": "0",
        "scaffold_count": "65",
        "contig_count": "65",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004684935.1-RS_2024_04_03",
        "annotation_date": "2024-04-03",
        "total_gene_count": "3641",
        "protein_coding_gene_count": "3528",
        "non_coding_gene_count": "78",
        "pubmed_id": "25634946"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-07",
    "dateModified": "2019-04-07",
    "datePublished": "2019-04-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sporolactobacillus shoreae"
        ],
        "sample_taxid": [
            "1465501"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand"
        ],
        "sample_host_location_id": [],
        "data_size": "1.046 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3654870",
        "Number of Sequences": "65",
        "Longest Sequences (bp)": "402834",
        "N50 (bp)": "128944",
        "Gap Ratio (%)": "0.009084",
        "GCcontent (%)": "45.3",
        "Number of CDSs": "3565",
        "Average Protein Length": "285.7",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "7",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Sporolactobacillus shoreae",
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                "accession": "GCA_004684935.1",
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                "species_taxid": 1465501,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1180,
                "total_fragments": 1183,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sporolactobacillus pectinivorans",
                "strain": "strain=GD201205",
                "accession": "GCA_002802965.1",
                "taxid": 1591408,
                "species_taxid": 1591408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4536,
                "matched_fragments": 549,
                "total_fragments": 1183,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporolactobacillus shoreicorticis",
                "strain": "strain=LMG 29111",
                "accession": "GCA_024125445.1",
                "taxid": 1923877,
                "species_taxid": 1923877,
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                "validated": true,
                "ani": 79.0725,
                "matched_fragments": 165,
                "total_fragments": 1183,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporolactobacillus laevolacticus",
                "strain": "strain=DSM 442",
                "accession": "GCA_000497245.1",
                "taxid": 33018,
                "species_taxid": 33018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5451,
                "matched_fragments": 202,
                "total_fragments": 1183,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporolactobacillus vineae",
                "strain": "strain=SL153",
                "accession": "GCA_000246965.2",
                "taxid": 444463,
                "species_taxid": 444463,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0929,
                "matched_fragments": 223,
                "total_fragments": 1183,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporolactobacillus vineae",
                "strain": "strain=DSM 21990",
                "accession": "GCA_000377985.1",
                "taxid": 444463,
                "species_taxid": 444463,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0746,
                "matched_fragments": 224,
                "total_fragments": 1183,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004684935.1",
                "gtdb_species": "s__Sporolactobacillus shoreae",
                "ani": 100.0,
                "matched_fragments": 1180,
                "total_fragments": 1183,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002802965.1",
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                "matched_fragments": 551,
                "total_fragments": 1183,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000497245.1",
                "gtdb_species": "s__Sporolactobacillus laevolacticus",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000377985.1",
                "gtdb_species": "s__Sporolactobacillus vineae",
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                "total_fragments": 1183,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
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                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004153165.1",
                "gtdb_species": "s__Sporolactobacillus sp004153165",
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                "matched_fragments": 131,
                "total_fragments": 1183,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004153225.1",
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                "matched_fragments": 113,
                "total_fragments": 1183,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900543345.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.271,
        "cell_length": 0.314,
        "doubling_h": null,
        "growth_tmp": 30.857,
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        "optimum_ph": 5.625,
        "genome_size": 3241710.4,
        "gc_content": 45.042,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Sporolactobacillus",
        "shoreae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}