{ "type": "genome", "identifier": "GCF_004745595.1", "organism": "Flavobacterium humi", "title": "Flavobacterium humi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004745595.1", "bioproject": "PRJNA224116", "biosample": "SAMN11295120", "wgs_master": "SRLH00000000.1", "refseq_category": "reference genome", "taxid": "2562683", "species_taxid": "2562683", "organism_name": "Flavobacterium humi", "infraspecific_name": "strain=DS2-A", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/08", "asm_name": "ASM474559v1", "asm_submitter": "Dongguk university", "gbrs_paired_asm": "GCA_004745595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/745/595/GCF_004745595.1_ASM474559v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3563867", "genome_size_ungapped": "3563576", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004745595.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3146", "protein_coding_gene_count": "3087", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-08", "dateModified": "2019-04-08", "datePublished": "2019-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium humi" ], "sample_taxid": [ "2562683" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.003 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3563867", "Number of Sequences": "14", "Longest Sequences (bp)": "678042", "N50 (bp)": "476310", "Gap Ratio (%)": "0.008165", "GCcontent (%)": "40.7", "Number of CDSs": "3083", "Average Protein Length": "346.5", "Coding Ratio (%)": "89.9", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium humi", "strain": "strain=DS2-A", "accession": "GCA_004745595.1", "taxid": 2562683, "species_taxid": 2562683, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1179, "total_fragments": 1181, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium amnicola", "strain": "strain=LLJ-11", "accession": "GCA_004122165.1", "taxid": 2506422, "species_taxid": 2506422, "relation_to_type": "type", "validated": true, "ani": 78.3994, "matched_fragments": 232, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium terrae", "strain": "strain=DSM 18829", "accession": "GCA_900142035.1", "taxid": 415425, "species_taxid": 415425, "relation_to_type": "type", "validated": true, "ani": 78.0991, "matched_fragments": 205, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=FPG3", "accession": "GCA_000754405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 78.0836, "matched_fragments": 212, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=ATCC 49418", "accession": "GCA_002217405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 78.0434, "matched_fragments": 204, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.9624, "matched_fragments": 283, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saliperosum", "strain": "strain=CGMCC 1.3801", "accession": "GCA_900100625.1", "taxid": 329186, "species_taxid": 329186, "relation_to_type": "type", "validated": true, "ani": 77.7842, "matched_fragments": 245, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cauense", "strain": "strain=CGMCC 1.7270", "accession": "GCA_007830385.1", "taxid": 510946, "species_taxid": 510946, "relation_to_type": "type", "validated": true, "ani": 77.7758, "matched_fragments": 245, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saliperosum", "strain": "strain=S13", "accession": "GCA_000498515.1", "taxid": 329186, "species_taxid": 329186, "relation_to_type": "type", "validated": true, "ani": 77.7722, "matched_fragments": 243, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=ATCC 17061", "accession": "GCA_002221975.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 77.7668, "matched_fragments": 153, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cauense", "strain": "strain=R2A-7", "accession": "GCA_000498475.1", "taxid": 510946, 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"ani": 77.3608, "matched_fragments": 232, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium noncentrifugens", "strain": "strain=CGMCC 1.10076", "accession": "GCA_900100375.1", "taxid": 1128970, "species_taxid": 1128970, "relation_to_type": "type", "validated": true, "ani": 77.3443, "matched_fragments": 182, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium enshiense", "strain": "strain=DK69", "accession": "GCA_000769895.1", "taxid": 1341165, "species_taxid": 1341165, "relation_to_type": "type", "validated": true, "ani": 77.298, "matched_fragments": 222, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=LMG 25203", "accession": "GCA_014385475.2", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.0859, "matched_fragments": 156, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.032, "matched_fragments": 155, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004745595.1", "gtdb_species": "s__Flavobacterium humi", "ani": 100.0, "matched_fragments": 1179, "total_fragments": 1181, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { 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