{ "type": "genome", "identifier": "GCF_004745635.1", "organism": "Methylobacterium nonmethylotrophicum", "title": "Methylobacterium nonmethylotrophicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Microbial Culture Collection Center (GDMCC), Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004745635.1", "bioproject": "PRJNA224116", "biosample": "SAMN10840095", "wgs_master": "SRLB00000000.1", "refseq_category": "reference genome", "taxid": "1141884", "species_taxid": "1141884", "organism_name": "Methylobacterium nonmethylotrophicum", "infraspecific_name": "strain=6HR-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/08", "asm_name": "ASM474563v1", "asm_submitter": "Guangdong Microbial Culture Collection Center (GDMCC), Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_004745635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/745/635/GCF_004745635.1_ASM474563v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7831372", "genome_size_ungapped": "7831372", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "102", "contig_count": "102", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004745635.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "7235", "protein_coding_gene_count": "7021", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-08", "dateModified": "2019-04-08", "datePublished": "2019-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium nonmethylotrophicum" ], "sample_taxid": [ "1141884" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Jiangxi" ], "sample_host_location_id": [], "data_size": "2.106 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7831372", "Number of Sequences": "102", "Longest Sequences (bp)": "588521", "N50 (bp)": "257564", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.0", "Number of CDSs": "7236", "Average Protein Length": "307.0", "Coding Ratio (%)": "85.1", "Number of rRNAs": "3", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", 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2051553, "species_taxid": 2051553, "relation_to_type": "type", "validated": true, "ani": 89.9744, "matched_fragments": 1808, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium platani", "strain": "strain=JCM 14648", "accession": "GCA_001043885.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 89.9447, "matched_fragments": 1526, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium platani", "strain": "strain=PMB02", "accession": "GCA_001653715.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 89.9308, "matched_fragments": 1712, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium variabile", "strain": "strain=DSM 16961", "accession": "GCA_001043975.1", "taxid": 298794, "species_taxid": 298794, "relation_to_type": "type", "validated": true, "ani": 89.8754, "matched_fragments": 1641, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, "species_taxid": 1187852, "relation_to_type": "type", "validated": true, "ani": 89.7718, "matched_fragments": 1550, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=IER25-16", "accession": "GCA_002759055.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 89.72, "matched_fragments": 1103, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 89.5944, "matched_fragments": 1775, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium aquaticum", "strain": "strain=DSM 16371", "accession": "GCA_001043915.1", "taxid": 270351, "species_taxid": 270351, "relation_to_type": "type", "validated": true, "ani": 88.6239, "matched_fragments": 1559, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 85.2386, "matched_fragments": 1561, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 84.7146, 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