{ "type": "genome", "identifier": "GCF_004745645.1", "organism": "Hymenobacter metallicola", "title": "Hymenobacter metallicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004745645.1", "bioproject": "PRJNA224116", "biosample": "SAMN11321684", "wgs_master": "SRMB00000000.1", "refseq_category": "reference genome", "taxid": "2563114", "species_taxid": "2563114", "organism_name": "Hymenobacter metallicola", "infraspecific_name": "strain=9PBR-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/08", "asm_name": "ASM474564v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_004745645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/745/645/GCF_004745645.1_ASM474564v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5940830", "genome_size_ungapped": "5940830", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004745645.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5152", "protein_coding_gene_count": "5085", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-08", "dateModified": "2019-04-08", "datePublished": "2019-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter metallicola" ], "sample_taxid": [ "2563114" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Meizhou, Guangdong Province" ], "sample_host_location_id": [], "data_size": "1.672 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5940830", "Number of Sequences": "15", "Longest Sequences (bp)": "2490753", "N50 (bp)": "1083269", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "5148", "Average Protein Length": "335.0", "Coding Ratio (%)": "87.1", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter persicinus", "strain": "strain=1-3-3-3", "accession": "GCA_004167665.1", "taxid": 2025506, "species_taxid": 2025506, "relation_to_type": "type", "validated": true, "ani": 82.042, "matched_fragments": 1049, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter daecheongensis", "strain": "strain=DSM 21074", "accession": "GCA_900141805.1", "taxid": 496053, "species_taxid": 496053, "relation_to_type": "type", "validated": true, "ani": 81.5173, "matched_fragments": 937, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 80.7373, "matched_fragments": 871, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 80.4565, "matched_fragments": 865, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rigui", "strain": "strain=KCTC 12533", "accession": "GCA_003944715.1", "taxid": 334424, "species_taxid": 334424, "relation_to_type": "type", "validated": true, "ani": 80.1267, "matched_fragments": 866, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter actinosclerus", "strain": "strain=DSM 15310", "accession": "GCA_900111515.1", "taxid": 82805, "species_taxid": 82805, "relation_to_type": "type", "validated": true, "ani": 79.8194, "matched_fragments": 781, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": 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